RNA id: XM_036983087.1


Basic Information

Item Value
RNA id XM_036983087.1
length 6043
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110527586
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26060369 ~ 26085630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacagactgcCACGCTCTTTCTGTCCCAACTAGTGGGAATACTGAAGATATGGGTGACTATTGAAAAATGCATTGTTCTAGTTCTCCTTTACTCTCCTGTTTGCGTCTCGGCGCCGGGGACAGGACCAAAAAGGGGAGTTGGGTGGGGCGGCAGACTCGGAAGCCTCCAGCACTTGACTTTGCTTTGATTTCGGCAGACACGAgaacacagcagggagagagacgagggggGTGGAGTGGCGAGTGAGTGCAAAGGGGCAggactttttctctctcctctattaaGAGGAAACTTTTGTGTTTTGTTCTCCAAGTTCAGCTCGGTCCTCAAGCCGTGTTCTCCGCTGCGCTTTTCTCCAATCTTCGCTCTTTTCTTCCATTCCCTCCGATGCCTTCATTTTTCTGCGTTTTTTTTCACTTTTCATTGCAATTCTGGATATCGAGATCATGCGCATTCAAACGGGACCTGTTCTGAAAATTGTTTGTTCTTCGTTTCCATTACTGTTTTAGTTGGAATATAAATGTTTCGCCGTGCACTGCTTGTTTTGGGGTAAAGATGACCCGTGTCTTTTGCGCTTTTGCTGGAGTCATGATGGTGTTTCGCATTATTTTGCTGTGCATCATGGAGTTGCATACTGGCTGCGATGCGGTGCTCGCCGCCGGTCTCACCACTTTCAGGGCTTTCGCTCCACCTGCACAAGAGGGTGTTGTGCGGACCGTCGATCGGATTTACCATGGTGGTGGGAAGGTTGGTTACCTACTCTACATGGATGGGAGAAAGTTTCAGTTAGATATGGAGAGGGATGAGTCAATTTTGTCACATCACTTCAGTCCGAAATATGTGATGGCCCTGATGGGGGCGGGAGAAGACGCCGCGCCTCTGCACCGGGAGTGTGTTTACCGGGGAACCGTGGACTCCAACCCCGAGTCCCTGGCGGTTTTCAGCCTCTGTGGTGGGGGTCTAGAGGGATTTTTCGCTTTGAAACACGCACGCTACACAATCACACTTCTCATCCGAACCAAGGGACACGATAATGACGTGCGCTCGCTGGATGACAAGGATGCGAAGAGCGCGCTCCACTACTTCACGCGGGAGCGCTTCAGCTTCGAAGCCATGCCTGTGAGCGAGAGCTGTGGGACCAAGGAAGGGCGCGGGCGCATGGATGCATCGAGGAAACACCGGCGTAAGGGTCGAGGGAACGGGAAACGCGACCGGCATGGTGTCACCCTGGACAGGGGCGAGGAGCGCAGCAGAGCGCACGGCAGAAGATGGTGGACGCAGTTGTCCAAACCTGCCTCTCCACCCTCACTGGGAAGTCGGCGCAAGAGATCGGTTTCGCGCGCCAGGCACGTGGAGCTCCTGCTGGTCGCAGATGAGTCCATGTCCAAGAAGTATGGCAAGGACCTGCACCACTACCTGCTCACGCTGGCCTCCATCGCTTCCAAGTTGTACGGCCATGCCAGCATCGAGAACCCCATCCGTCTGTCCGTTGTGAAGGTGACCATGGTcacggagaaggagaaggggctGGATGTGTCCAAGAACGCAGCCGCCACGCTCAAGAGCTTCTGCAAGTGGCAGAACCAGCAGAACCCACTGGACGACGACAACCAGCACCACCACGACGCCGCCATCCTCTTCACCAGGcagGACCTGTGTGGGCACCACTCGTGTGACACACTGGGCATGGCCGACGTTGGCACCATCTGTTCACCAGAGAGGAGCTGTGCCGTCATAGAGGACGACGGACTCCATGCCGCCTTCACCGTGGCACACGAGATAGGTCACTTGCTGGGCCTGTCTCACGACGACTCCAAGTTCTGCGAAGAGCGTTTCGGCGCCAGCGCGGACAAGCGTCTCATGTCGTCCATCCTGACCTCCATCGACGCCTCCAAACCCTGGAGCCGCTGCACCTCAGCTACCATCACGGACTTCTTTGACGATGGCAACGCCGAGTGTCTCCTGGACTCCCCCCGCCAGCCCCTGCTCGGCTCAGAGGAGCTGCCCGGCCAGAGCTACGACGCTGTGCGCCAATGCCGCCTGGCGTTTGGACCCGAGTACACGGTCTGCCCGGGCATGGATGTGTGCGCCCGCCTGTGGTGCGCAGTGATACGCCAGGGGCAGATGGTGTGCCTGACCAAGAAGCTGCCCGCCGTGGAGGGCACGCCGTGTGGCAAGGGTCGCATCTGCCTCCAGGGAAAGTGTGTGGACAAGACCCGCAAGAGACACTACTCGGCATCTAACCATGGTAGTTGGAGTTCATGGGGTCCGTGGGGGGCATGTTCGAGGACGTGTGGTGGAGGGGTGCAGTTTGCCCAGCGTCTGTGTAACAACCCGCCGCCCCGAAACAATGGGCGCTACTGCACCGGCAAGAGGGCCATCTACAAGTCCTGCAGTGTCATCCCGTGCCCCTCGCCCAGTAAGAGTTTCCGCCAGGAGCAGTGTGAGTTGCGGAACGGCCCCCAGACAGACCCTAAGGGGGTGAAGACCTTTGTGGAGTGGGTACCCAAGTTCGCAGGGGTGCTACCTAAAGATGTGTGCAAGCTGACCTGCCGGGCCAAGGGCACAGGCTACTATGTGGTGTTCTCGCAGAGGGTGGCGGACGGGACAGAATGTCGGCCTTAcagcagctcagtgtgtgtgaagGGCAAGTGTGTGCGTACCGGCTGTGACGGCATCATCGGCTCCAAGCTGCAGTTTGACAAGTGTGGCATCTGTGGAGGGGACAGCACCGGCTGCATCCGGGTGATAGGGAACTTCACCAAGAAGAGTAAGGGCTACACAGACGTCGTGAAGATCCCAGCGGGCTCCACCCACATCAAGGTCCGCCAGCACAAGCCCAAGGACCATCCCCGCTACACAGCCTACCTGGCCCTGCGTCGTCCCAGTGGCGACTACCTTCTCAACGGCAAGTTCATGATCTCTACCTCAGAGACGGTCATCCCCCTCAACGGCTCGGTGCTCAACTACAGTGGCTGGAGCCAGCGGGACGAGTGGCTACACAGCATGGGCCCTGGGGCCCTCAGAGAGGCCCTTACAGTTCAGATTCTGGCCACGGACGCCAAGAGGCCCCTGGATATCCGCTACAGCTTCTTCATGCCCCGTCGTGTTTCGGCTCCACCGCCACCACCTCCCCCGCACACCTCCACAACTAcacccaccactactactactacaacaaccaccTCTACTAGATCAAGCAGTAGAACCATATCGGCTCCGTTTTTGGCCCTGGCTCTCTCTACAGCCCCAGGGGTGTCGACGGCGGCGGCCTCTGGGCCCCAGTGGGTGACTGGCCCCTGGATGATCTGCTCCAGGACTTGTGACACAGGCTGGCAGAGCCGCACGGTGCAGTGCAAGGACCCGCAGGCCAAGCTGGCCAAGGGCTGCCCTCTGGGCGACCGCCTCTCCGCCTTCAAACAATGCCTGGTGAAAAAGTGTTGAGAGGACCAGAAACTAGACTCCCCTGAAAGTAGGgggtacacacagacagagagactggctATTGACAGTCAACCCCTCCTCTTCCCTACCCCTCCCACCCTACTATGCCAGGCCCTGCTTGGCACAGCTACAGACATACGACGGACACATGTGAACACTTCCGAATAGTGCAGCCGCCCAATCAGCAACCACCCACTTGTCACATCCCTCCTCTATCGGAAGGTTTTGTTTGTATTCCCCTGTTAATTACATGTTTTGTTTGCCTTCCTGTATGTTCTTGCTACTGTGGGTTTTTCATGATTTGTCCGCTTTGTCTCTTTGTCTTGCGTGACTGCACACCTCCGGACAATGGGCCTCCGTTCTGTCGAGGGGCAGTTTTTCTCCACTTCCTTTCGGGGTACCCCGTTTTTCTTCTTGCTCTACCCACTGACGATTCTCCACATACGTTTGGTCTATCCAACTTCCTGTTTGGATTGCGGACCAGGAAGTAGGCTGGGGGCACAACCAAGAGCAAACGATCCGTACTGTAACCAGTCCAGAAATGGGGTTGAACCGCACTGCAAACATCCCAGGTCAGAAAATGGACATGCAGTGATAGACTGAGTTGGGGCAGAGTTGTGCCCAACAGCTAGTGCTGAGCGATTTTAAACCTTCATTTTGTTTATTATTTtggtttttaaacaactaattgacagaCTTTGTTTCAATTATTTGGATCCCATGTAGTTATGTTTTATTCTGTGAACTCAATGTGCACATGGGGCAGTTTCTCTAgaaataaatcagatcaagcccaaACTATGCGATGGAGTTGGGAGTTGTAGTTTACATCAGGCCAATATTCTAAATAGTTTAGTGCAGAAAACATGCTAATTAACTACAATGATCATAATGGATTGCGTGCGTACTTGTCCGATCTGTgtgtttcttttatgcctgctacatcAGGTTAGTACAGAAGAAGGCGCAttcgagagggaaagagagcagtTACATTGCgaagtatctctacctgaaaatgcATAGTCTAAGGggttgatagttggtattcagtagtcataaaagtatgccttatttactttgaagaactactaaaatactGATTTTGTCAGAccgcataggcagcagctctacaggaaggacttggaattaaataataaagtcGTCAAATTAAACAAGTGTAAtataaacaactgaaatatttgagTAATTGATAAGTAGTACTGGGCAGTCGCTATCATTATTacttgttttattctgtgttacagcattcaacccacataatgcatagtgcatttaataTTTTCAGAAATGGTTTGAAATCGAAAACcatgatttatattttaataATCGAACCGAaaccgaaccgacctcaaaaagcactaatcgctcagcactaccaaCTGCCAATGCCCAGTGACACCTATAGAGTGACACTGGGCCAAGAGACCATGGTGAACCTTCAACTCTGACCTTTGTGGAGGTTAAAGGTTGTAATTATATAGGATTACATAATGTGTGGGGCTAAGCTTGACATTTGagtgtttgtctttgtgtgtatGGGTTTGTTTATATTGTGAACATACACGTGTGAACATACAGTGTTTTTGTCATACTCAGTGTCCTAAACTCTTTTAATGGACTTTAACCCTCAGTTCCATTTGTATCACTATGCGGGTGCTAGAGGGTCGCTACCATTTTGTCACTATGTTTATTTGGCTCTACACGtccgtctgtctttctgtctgtttgtctgattAGGAAAAAAGCAATTCTTGCTAGTATGACAATGTGTGCACTGGATACTCGCAAATACAGCAAGAGGGAAACTAACCCAGTCATACCTGACCAAATACACttctacagctctctctctctcaacatattgaCACATTCTTGTTTAAGCTATCCATTTCTCTCACTCTGACATCCACTACCATCCATTCTctgtcatccctctatccctcatgAGCTTGTAATGCGAAACCACACACCCTTTGACGGGTGGTGATAGACATGCAATATACTGGATACATATGGGATCTTGCAACATAGGCACAACTCACTGTTTGTCatacacaggcacagacacacattgaCATAAAGAATACACAACACCCCCAAATGACTTAATTAAGAGTATTTTCACTGTATTAGGCCCACATTAACGCATAATACAcacatattttacacacacattttaaCTCGCACAATACATGTTTAGATAGAAGCAACAGTATCACATATGTACAGAATACattttgcacacacacatatgtttAAAAAATTCCACCgcacgcatgcaaacacacacacacaccaatatagTGTATCTGTATTACTGTTTGACACTTCCCATGGGAAAAGACCCTTTCGTTGAACGACAGAAACACAGCACTGAACTTGTAATTTATTGTTTGTACAACTGGTATGTGAAAAAAAGAACCATGTGAtgaatttatttattattatggtAATGTTGTATCATGTTTACTATTTAACTAATAATATGACTGTGCAGAATAATTCATTTTGAAGAAAATTGTGCTTTCTAGTCATCTACATGAATATATGtacataaaatgtatatatttaaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08620 ADAMTS5; a disintegrin and metalloproteinase with thrombospondin motifs 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU673162 lncRNA downstream 110972 25939371 ~ 25949397 (-) True G590313
TU672910 lncRNA downstream 508886 25550648 ~ 25551483 (-) True pard3ba
TU672393 lncRNA downstream 560002 25459172 ~ 25500367 (-) True nrp2a
TU672448 lncRNA downstream 598516 25461562 ~ 25461853 (-) True G589662
TU672440 lncRNA downstream 620257 25439798 ~ 25440112 (-) True G589654
TU673254 lncRNA upstream 9328 26094958 ~ 26095403 (-) True G590397
TU673295 lncRNA upstream 60532 26146162 ~ 26146514 (-) True G590430
TU673405 lncRNA upstream 151029 26236659 ~ 26236859 (-) True G590539
TU673452 lncRNA upstream 184703 26270333 ~ 26270869 (-) True G590584
TU673465 lncRNA upstream 192947 26278577 ~ 26278814 (-) True G590597
XM_021608966.2 mRNA downstream 4922 26047765 ~ 26055447 (-) False adamts1
XM_036983086.1 mRNA downstream 4922 26047765 ~ 26055447 (-) False adamts1
XM_036983084.1 mRNA downstream 14911 26035647 ~ 26045458 (-) False cyyr1
XM_036983085.1 mRNA downstream 14911 26035647 ~ 26045458 (-) True cyyr1
XM_021608965.2 mRNA downstream 35053 25983669 ~ 26025316 (-) True appa
XM_036983090.1 mRNA upstream 10523 26096153 ~ 26137065 (-) False LOC110527587
XM_036983093.1 mRNA upstream 10523 26096153 ~ 26138387 (-) False LOC110527587
XM_036983091.1 mRNA upstream 10523 26096153 ~ 26139355 (-) False LOC110527587
XM_036983089.1 mRNA upstream 10523 26096153 ~ 26139944 (-) False LOC110527587
XM_036983088.1 mRNA upstream 10523 26096153 ~ 26139946 (-) False LOC110527587
TU672491 other downstream 514951 25544735 ~ 25545418 (-) True G589705
TU672303 other downstream 769764 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 781495 25201406 ~ 25278874 (-) True G589529
TU671806 other downstream 1081262 24971613 ~ 24979107 (-) True G589093
TU671692 other downstream 1231669 24828488 ~ 24828700 (-) True G588987
TU673308 other upstream 72363 26157993 ~ 26158305 (-) True G590443
TU674230 other upstream 492539 26578169 ~ 26585507 (-) True LOC110527590
TU674725 other upstream 1080545 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 1397327 27482957 ~ 27483780 (-) True G592298
TU677787 other upstream 2938777 29024407 ~ 29026049 (-) True G594636

Expression Profile