RNA id: XM_036983092.1


Basic Information

Item Value
RNA id XM_036983092.1
length 3001
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110527587
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26096153 ~ 26139949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAAGTGCTGTAGGACCCGCTACTGGTGAACGTCTTTCGGCTTCTAATGCTGCGTTCAAGGGCTCGTCGGAAACTTAAACTCAGACAAACCCGGAATTGTTACTGATTGAACGCGGCACGcgtataactacaaccagttagcaagtcggaCATTTAAGTGTTTCCTAGTTCCGAATAGCACGTGAACGCAGCAAATGTATAGGCTGCTCTTCGGAATTAGGTAGGCTAAAATAACCGCGGTCGTAATCCTTGTGAAATGCTAAATGTTGACCACGAAAAACGCATTGTTTTTAGGCTATTTATTTGCGTGGTTTCATCTGCGCTGTTGTATGGCGTATGAAAGTTTTCGATAACCGTACCAAATTAAACCTGATTATTATAAATGATTAACCCAGTAATTCTAAAGTTCACCGTTTTACATTCGTTCTCATATGCTCACAACTATTTGTGTTGCCCGTGAGGTGTGTTATGAAAGGCGCAAGGAAGGCATGTTGTGGAGATCCGTCTCTACATCCATTGTAAGCTATCATACCAGGTACAAgggtgtgtgtgtatctctaccGGATCCCGTCATGTCGACCCAGCCTGCTCCGGAGCAGGGAGGTGTGTTGCTGAACAGTGGCCTGTACATGAAGAGCAAGAAGGGTTTGGAGGCCGGGAAAGTGGAAGGCCTGCAGGCCCGGGGCCAGTGGGCCAGCAAGGCAGAGTTCCTGCTGGCTGTGGCGGGACAGATCATAGGCCTGGGCAACGTGTGGAGATTCCCCTACCTGTGCTACAAGAACGGAGGAGgtgtgtTCTTTGTGCCCTACCTGTTGTTTCTGGTTCTGTGTGGTGTTCCGCTCTTCCTGATGGAGACCTCTCTGGGTCAGTATACCAGCCTGGGAGGGGTCAGTGCCTGGAGGAGCATCTGCCCACTGTTCGGagGTCTGGGCTTTGCCAGTCAGGTGATGATCCTCCACGGGTGTGTGTATTACATTGTGGTCCTGGCCTGGGCTCTCTTCTACCTGGTCCACAGCTTCCAGTCAGAGCTGCCCTGGGCCCACTGCAACAACACCTGGAACACAGATACCTGTGTGTTGTTTGACTGTCAGAACCTAACCTCTGGGACCGGCCTACCAGAGAACGCTACCTCGCCTGTCATCGAGTTCTGGGAgCGGGAGGTCCTGCAGCTGTCCAGTGGACCAGATGAGCTGGGGCCAGTCAGCTGGAGGCTGGCTCTGTGTCTACTGCTAGTCTGGGTCGTCTGCTACTTCTGTGTGTGGAAGGGGGTCAAATCCACTGGCAAGGTATGGATGGATGCGGGGACTCAGATCTTCTTCTCTTATGGCATCTGTCTGGGGAGCCTTACCGCCCTGGGCAGCTACAACAAATACAACAACGACTGCTATAAGGACTGTTTTTCCCTGTGCCTGCTGAACAGTTGCACCAGCTTCCTGGCAGGCTTTGCCATCTTCTCTGTGCTAGGCTTCATGGCTCAGGAGCAGGGCGTGGACATTGCAGATGTGGCCCAGTCAGgCCCTGGGCTGGCCTTTATAGCTTACCCTCGGGCCGTAGCCATGATGCCTCTCCCTCAGCTCTGGGCTGTGTGCTTCTTCCTCATGATCATCATGCTGGGGCTGGACACACAGTTTGTGAGCTTGGAGGCCCTGATGACCTCTGTGACTGACCTCTACCCTATGGTGATCCGGCGAGGTTATCGACGagagctgctgctgctgatggTGTGTGTCGTCTGCTTCCTGGTTGGCCTGGTCATGGTCACCCCGGGTGGTCTCTATGTGTTCCAGATCTATGACCACTACTCCTGTAGTGGGGCCAGTCTGCTGCTCCTGTCCATCTTCCAGTCAGTGGCCGTGGGCTGGGTTTACGGGCCTGACAGGTTCAATGACAACATTAAGCACATGATTGGCTACAGCCCGCTGCCCTTCTTCAAGCTGTGCTGGCGCTACCTGACGCCAGCCATGTGCACGgcgaCGTTTGTGTTCTCCTTGGTGTGCTGGTCCCCTCTGTCCCTGGGCAAGGGCATAGTAGCCCCGGGGTGGGCCACAGCTCTGGGATggctcctcaccctctcctctgtctccctgctgcCCCTCTGTGCACTTTACGCCCTTGCCACCACCCCCGGCAGCCTAACACAGCGTTTCCGCCGGCTGTGTCGTCCTGCCCCCGACTCCAATTTGGCCATGGACCACCGGAACCACCTCTCACCTTTGAACCCTGTCTGGCTCTCACCGCCAGAAATCCAATGAGCCAATCGCAGACGTGCTCTAGGGACGACCACCCTGGGTTTAGCCAATGATACGGTTTCTGCGCACCAATGGGACAGATCAGAATTGGGGGTCATGGGAtgtttctgtggagatgggaaggCCTCTGCCCCTCTGTTGTGTTCTCACTGGTAAATGGAGACAGGATGGTGGTTGAAACTGTGATGGGCCTGGGATATGTGGACCGGACTTAGTGACATGCCCatgaaggaggggggagggggaaatgACCTCATCAATTCAGTCAGACTAGTCAATGGTTTCTGACTGGACTATTTTGATCAGACTGATTGGGtctgaaatggtaccctattccctccctatatagcacactattacctttaaccagggcgctagggctctggtcaaaagtagtgcactatgtaggaaatatggtgccatttcAGTCTGTAATTGGCTGATTGGATTAAGGCATTAAGTGAAACTGTTTACAGAAAATGAGAAATCTCATCTGGGATTGGAAGTAGTGAAGAAAATCAGAccgtaaaatatatatttctccTTTTTGCTATTTATTGTGTTGAATAATGAATCGAGTATGCAGTACCATGTTGAAAACAGAAGTAATAATCAGAGACATaccatacactgagtgtacgaaacgttaggaacacctgctctttccatgacacagactgaccaggtgaacgctatgctcccttattgatgtcacttcttaagtcattgtacctaaactgtatgtgtaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU673254 lncRNA downstream 750 26094958 ~ 26095403 (-) True G590397
TU673203 lncRNA downstream 10108 26047922 ~ 26086045 (-) True adamts1
TU673162 lncRNA downstream 146756 25939371 ~ 25949397 (-) True G590313
TU672910 lncRNA downstream 544670 25550648 ~ 25551483 (-) True pard3ba
TU672448 lncRNA downstream 634300 25461562 ~ 25461853 (-) True G589662
TU673295 lncRNA upstream 6213 26146162 ~ 26146514 (-) True G590430
TU673405 lncRNA upstream 96710 26236659 ~ 26236859 (-) True G590539
TU673452 lncRNA upstream 130384 26270333 ~ 26270869 (-) True G590584
TU673465 lncRNA upstream 138628 26278577 ~ 26278814 (-) True G590597
TU673489 lncRNA upstream 161242 26301191 ~ 26301503 (-) True G590620
XM_036983087.1 mRNA downstream 10523 26060369 ~ 26085630 (-) True LOC110527586
XM_021608966.2 mRNA downstream 40706 26047765 ~ 26055447 (-) False adamts1
XM_036983086.1 mRNA downstream 40706 26047765 ~ 26055447 (-) False adamts1
XM_036983084.1 mRNA downstream 50695 26035647 ~ 26045458 (-) False cyyr1
XM_021608972.2 mRNA upstream 407720 26547669 ~ 26571079 (-) True gart
XM_036983095.1 mRNA upstream 436023 26575972 ~ 26580793 (-) False LOC110527590
XM_036983096.1 mRNA upstream 436023 26575972 ~ 26585515 (-) False LOC110527590
XM_021608973.2 mRNA upstream 436023 26575972 ~ 26585525 (-) False LOC110527590
XM_036983097.1 mRNA upstream 589689 26729638 ~ 26865769 (-) False LOC110527591
TU672491 other downstream 550735 25544735 ~ 25545418 (-) True G589705
TU672303 other downstream 805548 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 817279 25201406 ~ 25278874 (-) True G589529
TU671806 other downstream 1117046 24971613 ~ 24979107 (-) True G589093
TU671692 other downstream 1267453 24828488 ~ 24828700 (-) True G588987
TU673308 other upstream 18044 26157993 ~ 26158305 (-) True G590443
TU674230 other upstream 438220 26578169 ~ 26585507 (-) True LOC110527590
TU674725 other upstream 1026226 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 1343008 27482957 ~ 27483780 (-) True G592298
TU677787 other upstream 2884458 29024407 ~ 29026049 (-) True G594636

Expression Profile