RNA id: TCONS_00036538


Basic Information

Item Value
RNA id TCONS_00036538
length 897
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_017070
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1354663 ~ 1355683 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacttcaggctcacattgattttgtctgggccgaataaagaccaccagtgccgcatacctgcctaaagtggcccacattcacaTGCTATCTGGGATAACAGCTACTGGGCAGTGAATACTGACTGTAATCAGCCCCCACCATTAACATTTACTGACCAGATCATCACACGCTCAATGTTTTTagtttaaagcaacatttttttaaactacacAAGTCTTTAACATTCCTAATTAGCTAAACGTTGGGACAAATATACTAAAGTTTAAAGTATGTTCGTAGAAATCTTTGGAAAGTTAAATGCATCTGGGCTTTCATAATAAAAGAGACTTCTTATacaaaccacacacaaacagtcCAAGCAGCGGCatagaagacacacacacacacacacacacacacacacacacacacacacacacacacacattcattctgtCTGATTCATGAGCtgaaaaaatgtccccacaaggtcaaaatgtactggtattgctatacttgtgaggACATTCGGTAGGAATATCAGGACCAcaactacatacacacacacacacacacattcattctgtCTGATTCACGAGCtgaaaaaatgtccccacaaggtcaaaatgtactggtattgctatacttgtgaggACATTCGGTAGGAATACCAGGaccacatctacacacacacacagagatatgaGTCCCTCTGTTTGATGGCTATGGCTGGAGTGTTTGGCTATGGGCTGTTTGCTGGTATGCTGACTTTCACACAGTCAGGTTCATGCAAGTCTTCTACTGTGTAGACGAACACAACGCTTCTTCCAGCTCTCCGTAAGTCCTCCAAACTCACTGGTTGACAGTCCATTCTGCAGGATGTTGAATACTTGAACGGGTTACACGTTACAGGTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036537 lncRNA upstream 150789 1200292 ~ 1203874 (+) False XLOC_017065
TCONS_00036536 lncRNA upstream 150861 1200292 ~ 1203802 (+) False XLOC_017065
TCONS_00036535 lncRNA upstream 151060 1200292 ~ 1203603 (+) False XLOC_017065
TCONS_00034075 lncRNA upstream 152481 1200366 ~ 1202182 (+) True XLOC_017065
TCONS_00036534 lncRNA upstream 454283 896905 ~ 900380 (+) True XLOC_017061
TCONS_00036360 lncRNA downstream 308076 1663759 ~ 1725048 (+) True XLOC_017074
TCONS_00036361 lncRNA downstream 805399 2161082 ~ 2162367 (+) True XLOC_017081
TCONS_00036362 lncRNA downstream 858006 2213689 ~ 2214421 (+) True XLOC_017082
TCONS_00034099 lncRNA downstream 906250 2261933 ~ 2266612 (+) True XLOC_017084
TCONS_00036539 lncRNA downstream 925941 2281624 ~ 2284813 (+) False XLOC_017085
TCONS_00034082 mRNA upstream 4367 1329509 ~ 1350296 (+) False XLOC_017069
TCONS_00034084 mRNA upstream 4501 1349043 ~ 1350162 (+) True XLOC_017069
TCONS_00034083 mRNA upstream 15678 1329628 ~ 1338985 (+) False XLOC_017069
TCONS_00034079 mRNA upstream 26804 1316495 ~ 1327859 (+) False XLOC_017068
TCONS_00034081 mRNA upstream 29668 1316831 ~ 1324995 (+) True XLOC_017068
TCONS_00034085 mRNA downstream 29991 1385674 ~ 1393020 (+) False XLOC_017071
TCONS_00034087 mRNA downstream 42881 1398564 ~ 1406308 (+) True XLOC_017072
TCONS_00034088 mRNA downstream 56510 1412193 ~ 1421005 (+) True XLOC_017073
TCONS_00034089 mRNA downstream 478579 1834262 ~ 1891596 (+) True XLOC_017075
TCONS_00034090 mRNA downstream 547798 1903481 ~ 1979652 (+) True XLOC_017076
TCONS_00034041 other upstream 1036558 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034086 other downstream 30066 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034116 other downstream 1552868 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 3719241 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 3750885 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 4068279 5423962 ~ 5424096 (+) True XLOC_017119

Expression Profile

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