RNA id: XM_021608973.2


Basic Information

Item Value
RNA id XM_021608973.2
length 1780
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110527590
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26575613 ~ 26585525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAAACCAACCGGAATCAACGTTAAATATAGCATGTAGAACAGTTGCTTTTTCTTGTCATTGCATACTCTGCAATTATAGTAAAAGTGCAGACATCAGGAAGCAGAGCAAATCTAGGTTTGTGTTAAGGTGTGGATtgtgaagatggagggagagcatCCTCATGAGGAGAAGCCGACTGAAACTGCTTGCTGTGCATCCCAATGTCCcaaagatggagaggaaaggCAGGGACAAGGGGCTATGTTATGGTCCATCCAGGAGGCAGTGGAGAGGCAGACCATGCAGATAGGAGCGTCCGCCTGTGGGGCAACGGCCGTAGTGGACGTCCTACAGGCCCTCGGCATCATTGTGGCACCCGAGACGGCTGACCGGTGTGTGCGGACGTGCCTGAGGAGGAACGAGGCGCCGCTGCCCGATTACCTGTTCTCCCGGAGCGAGGCTGGCGCCACACACGCACAGCTGATAGCTGGGGCGGAGCAGGCCAGTGGTGGGCGCGTGCTGGGTCGCCACTTCCCCCTCCACCCTCGCCGGCGGGTGAGGCTGGTACCCTGGCTGGCACAGTGGATCCAGAAAGGGGCAGTGCCCGTGGCCACCATGAACATGCAGCTGGCAGtgccagagggagaggaggttccCGACGCATGGCACCACCAACTCATCTTTGGGGTCGGACCCGACACTGTCTATATGACCAACCCCCTGGATGTGGTGAGTGAGCGGGAGGTGCATCAGCGACTCTGCAGTGAATCTGTGTTGCTGATACGTCGAGAGGATGTGCTGCTGAGATTGACAGCTGACGCCCCTCTGTCTAGCCTATCAGACGACCAGTCTGACCCACGCTGGAAAGCCCTGGAtgtggaggGTCAATTGAGGCAGATGATTTGTGAGGAAGACCATGATGATGAAGATCAGTTTAGGATGAGCCATGTCGTGATCCCCGCAGCGTACAGTTCAGGTGTGACAGTCTTCGCCCTCAGAGACTCAGACCAAGGACAGGAGCTTCTCCACACCCCTGAACTCCCTTTGCTTTGATATGGCTGGACAGTGGACACATCATTACCAAAAATCTTGCTCTGATTGGACAATGCATCTTTGACCTTCCCGCTATTGTTACATGTATTCGGTGAGGGGAAATGTTCAGAAACTGGTGATAGAAATGTCATTAATAGAGCTAACATGGTTCCTTATTCTACAGGTAAGAGAGGCTTGTCTGTTCTACATATTATATTTATATCTGAACATCCAACAACATTGCACCCTGCTGAATGTGCCCCAGGCGTATTCAGTGAGGTGAAGCACTCAAAAACTATAGAATTGATAGAGCTGACTCAATTTCCTATTCAGACACAACTCATAATTCTGATATGTCTATCTATAATATTGGCCAGTCATGTtgtacacaatacattttttatctGAACGTTCAGTAACGTTACTCCGACCTGAACGAGGCCCTGCTGCTGTACAGTAGGATATCCGTCCCTGACAGTAATACTTTGTTTGAACACTTTTCTGGGTCGTATTCACTGACATAAAGCAGAAGAAAATGAACCGAAACAGGGAGTGACTCCCTGAACTTACCCAATAACAAACATTCATTTTCCTATTCCATTGCATAACATTTTGCTACAGTatgcactaatgaatacgaccctgatCTTATGTGTGTGATGTTAAGAATAGCCTACTTGATGTATGCCCctgcaccagtggaggctgctgagtggagAACAGCTCGTAATAATGGCTAGAACTGCGCAAATAGAATGGcaccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU674184 lncRNA downstream 12661 26562791 ~ 26563311 (-) True G591291
TU674221 lncRNA downstream 31716 26543995 ~ 26544256 (-) True G591323
TU674218 lncRNA downstream 32292 26541989 ~ 26543680 (-) False G591322
TU674217 lncRNA downstream 32346 26542540 ~ 26543626 (-) True G591322
TU674207 lncRNA downstream 43228 26532434 ~ 26532744 (-) True G591314
TU674246 lncRNA upstream 11489 26597014 ~ 26597276 (-) True G591348
TU674247 lncRNA upstream 12308 26597833 ~ 26598097 (-) True G591349
TU674306 lncRNA upstream 96756 26682281 ~ 26682605 (-) True G591403
TU674316 lncRNA upstream 115166 26700691 ~ 26700913 (-) True G591413
TU674317 lncRNA upstream 117989 26703514 ~ 26703748 (-) True G591414
XM_021608972.2 mRNA downstream 4893 26547669 ~ 26571079 (-) True gart
XM_036983092.1 mRNA downstream 436023 26096153 ~ 26139949 (-) True LOC110527587
XM_036983088.1 mRNA downstream 436026 26096153 ~ 26139946 (-) False LOC110527587
XM_036983089.1 mRNA downstream 436028 26096153 ~ 26139944 (-) False LOC110527587
XM_036983091.1 mRNA downstream 436617 26096153 ~ 26139355 (-) False LOC110527587
XM_036983097.1 mRNA upstream 144113 26729638 ~ 26865769 (-) False LOC110527591
XM_036983099.1 mRNA upstream 144113 26729638 ~ 26865769 (-) False LOC110527591
XM_036983100.1 mRNA upstream 144113 26729638 ~ 26865769 (-) False LOC110527591
XM_036983098.1 mRNA upstream 144113 26729638 ~ 27142641 (-) True LOC110527591
XM_021608979.2 mRNA upstream 1036181 27621706 ~ 27691752 (-) True fam155a
TU673308 other downstream 417667 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 1030554 25544735 ~ 25545418 (-) True G589705
TU672303 other downstream 1285367 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 1297098 25201406 ~ 25278874 (-) True G589529
TU671806 other downstream 1596865 24971613 ~ 24979107 (-) True G589093
TU674725 other upstream 580650 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 897432 27482957 ~ 27483780 (-) True G592298
TU677787 other upstream 2438882 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 2831330 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 2982676 29568201 ~ 29593462 (-) True G594900

Expression Profile