RNA id: XM_036983100.1


Basic Information

Item Value
RNA id XM_036983100.1
length 5543
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110527591
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26729638 ~ 27142641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGTATATGCTtatctttttttctctttctctctctcctcacagctGTTCTGCAGGTGTCCATATCCTTGAACAAGGTGGAGCTAAGTGTGGGAGAGTCCAAGTTCTTCAAATGCACAGtgATCGGCGAGCCGGTGAAGTTGGAGTGGTTTAACCCCCAGGGGGAGCGCATCGTGTCTTCCCAGCGTGTGGCCCTGCACACCGGGGAGGACAGCTCCAGGCTGACCATCTACAACGCTGTAGTGGAGGACGCGGGCATCTACCGCTGCCAGACCACCGACGCCCAGGGACAGACACAGGAGGCCACCATGGTGCTGGAGATGTACCAGAAGCTGACATTCCGCGACGTGAGGTCCCCCCAGGAGTTCCGCCACGGCGAGGCGGCAGAGGTGGTGTGTGATGTCATCGCCTCGCCGGCACCCGCGGTCTCTTGGTTCTACCAAAAGGGCTTCAAGAGCATGGAGATCACAGAGGAGCACTACAGCAGGTTCCAGGTGCTGCCCAACAACAACCTGCAGATCCACAAGGTGACCAAGGCGGATGAGGGCGTGTACCGCTGCGAAGCGCGAGTGGAGGCCCGCGGCGAGATCGACTTTGTTGACATCGAGGTGGTGGTGAATGTTCCTCCTGTGCTGTCGATACTACAGCAGTCATTCAATGCCACAGCAGACTACCAGGAGTCAGTGACTTTCACCTGCGTCACATCGGGATCCCCCGACCCCGATGTCACCTGGCACAGGAAGGGCCAGAGGTTGGAGAGGTCGGAGCAGTACGTCCTCAACACCATGGAGGGAGGCAGGAGTACCCTGACCATCCGCAACATCATCCAAGGGGACGGGGGCGGCTATACCTGCCGAGCCACCAACAAGGCCGGGGCGGAGGAGAGGGAGCTCTTCCTCAAAGTGTTCGtcCAGCCACACATCACCCAGCTGCGTAACGTGACGGCGGTAGAGGGCAGCGCCGCCATGATCTCCTGTGTGGCCGAGGGTGAGCCGCTGCCTGAGATCTCCTGGAGGAGAGCCAACGACGGTCGGAGCTTCACCGACGGAGACAAGagcCAAGATGGACGTATGGATGTGCGGGGCCGCCATGGCAAGTCCATGTTGACCATCAGTGGGGTGAAGCTTACTGACTTGGGACGTTTTGACTGTGAGGCCCTCAGCAGGATCGGGGGCCACCAAAAGAGCATGTTCCTCGATATAGAGTACATGCCCAAGTTCCAGACCAACCAAACCATCTTTTACTCGTGGGAGGGCAACCCGGTGAACATCAGCTGTGACGTCAAGTCCAACCCGCCCGCCACCATGCTATGGAGGAGAGAACGCCTCACCATCTCGGCCGAAGGCACTGCCAACACACGTGTCCACACAATCGACGGCAAGTCCCTGCTAGAGGTCACCCCAGTGTCCGACAGGGATTTCGGACGCTACAACTGCACGGCACGTAACAACATCGGAGCGAAATACCAGGAGTTCATCTTGGCCCAGGCAGACGTGCCCTCGAACCCGTACTCGGTGCGCTTGTCGGCCGTGTCGCAGCGCATCGCCACGGTGACATTCATGAAACCTGACTCACATGGCGGTGTACCCATTGGCCACTACCTGGTCAACTACAAGGATGTGGGCTCGCAGGACTGGAGAGACGTCAAGTCTCATGGTGTCCAAACGATAGTACTGCTGACAGGCCTAGAGCCCAACACCACCTACGAAGTGCGAGTGGCTGCAGCCAATGGGAAGGGCCAGGGGGAGTTCAGCCACACGGAGTCCTTCCAGACTCTACCCATACGTGAGCCCAGCCCCCCGGCAGTGCATGGCcagagagggatggggaaggcCTACCGGCTGGGCCTTGTCAAGCAAGACGACGGGGGCATGCCCATTGTGGAATACATTGTCAAGTACAAGACGGACAAGGAGGAGCAGTGGATGACGAAGCTGGTGTCGGGGCAGCAAGACTTTGCCCTGCTGCAGCCACTGCAGTGGAACACGCGATACGAGGTGGAGATCACGGCTCGCAACGTCAAGGGCCTCTCGGAGCCCACCTTTTACCAGTTCTTCATGCCCCAGAAACCAGACATCATAGCAGACTCCCTGTTCAGCGGCCTGGGGCTGGGGCCTGTGGTGGGCCTGGGTCTGGTCGTACTCCTCCTGGTCCTCGTGTTGGTGGACGTCAGCTGCTACTTCCTGCGCCAGTGTGGCCTGCTCATGTGTATCACGCGCAAGCTCTGCAGCAAGAAGACGGCCACCAGCGGCAAGAgcaaggagatggaggagggcaaGGCCGCCTACCTGAAGCTACCGCTGAAGGAGGAGAACGGGAAGGAGACGCTCAAGCCCGACATGATCGAGATCAAAGTGCACAGTGACAACAGCATCCACACAAAGCAGGACGACAGTAAAGCATAAAATGTGTGTGCCCTCTCGCCCCTCGCCGCAAACGAGAACACTTCGGAGCATCCTACCCTGAGACCAAAACACAGAATAAACACGAcacgtaaaaaaaatatgatgatATCCCTTATATGTCCATAAGGGCCCAGAGAAAAAACGAAAAGTGTGTGTAAATACAAATAAGAGAGAGGAAGACCCCAACAACAAGCGTTTTTATGTGACTAATCAATGATGTTGTTTCTATCCAAGATGGCTCCAGTCGAAGACACTTCGTGTTGATCAGTGATTGTAATATTGTTTCATTTTTTCCTCTGACTTTGGtttaattgttgttttttttatgccTTGGCCGTTGCTTATCcgttgcatttatttattttccttcccCCTCTTATTCAATCCCCATTTGCAAAAACCCACCTGatcctacacacatacatacatacatacatacatacatacatacatacacacacacacacacacacacacaaacacatacacgccAAAGCTCTCTGTCTGAAGGATAAGTAGCGCCACTATCGACTCCCACTCAAGTCCGCTGTGCCTGGTAAAAAAAGATCTCCTACAGTAGCATTTACAGAGTAAGCTACCCTGTCCTCACTGCAGCAGTCTCGTCTGTATTCTATTGCGGCTCTGGTCTAAGATGTGATGTCTGGGCTGTCCTGTCTAATGCTTGTGTACTACGTTACATCCGCCCCTTTATGCCCGCTCCTCTTTGAGCTTCCGGCTCAGAGAATGTTGAGCTAGCTCATTGGTTATGCCACCATTTTGATTTGTTCTTTTAAAGAAGATAAAAAAATTAACAGGTACTGTCAAGGTGCCTTTGCACATTGTAGTGATAGTCGTATtggtgtgtctgaatgtgtctgctGTTATGAGTTTGAGAGCTGTTATGAGTGTGAGAGCTGTGTAAATATATTTAGCATATTTGATCAAAATCGTTTGCGTTAACTATGCAAGCTGTCTGTCTCCATTATTTTACTAGTGTACCATGTGTATCCATAAGGTGACAGCATGACAGGAAAATAATCTCTGATGATAATAGCTATTTGTTAGCCAGTTAGAAAGAATCCCCCAAGATCCATTATGGTTCTAGGTGGTTACATCTGAGAGGACCACGTGGTCAGCACACATGGTTCATGTGGTCAGGAAGTTAGCCAGGAAATTTAAAATATTTTGAACAGAATATGAACATAGTTACACCTGCCACTGTTGACCAATGAGCTGGCTTCATTGTAAGGATTGTGCAAGGTTGTGTTTTAGCACTGGTTTTGATGGTGATGCCATGAGTACTGCTGTTTTTAGGCAGACAATGAATCTGTACCGGGCCCTTAGAGTTATAGGTAATGTTTCCTGTGTATTTGTTAACAGTCTTCATGGTGTATCCGTAACCAGGCTACAGCGCTTGTTATCTCGCACCTCAAAACACAACAATAAACAACAGAGACAattttgtgttattttatggTTACTCTGCTTTACATTGAATGTTTATTTAAATTTTTTGCCGTTCAattctttttaaatattttttttttctcaaagacaggaaaaaaaaacaattgatgTTGACATGAAATTGAAATGTGAAAATAATGTGGTTGTCATACAGTCCTGTGAGTagtttttttgggggaaaaagtAGTCTATAAAAAGGAAAAGACAGTCATGTCCAATATTGTTTGCTTCATTTGAAAGTTGTGCCATCATTCTATTGACTAAAGGTGAAAACCAATGAATGTTGAATTGTTCTGTTCTCAACTGTTAGACTAGACACGGGCACACGCAAAGTATTTCAGTCATGTTTTTTTAGATACACTTAATTTATAGTTGATTTTAGTTTAATGGCAATATTAATGATCGAAAACCAATTAACATTTTTCTGTTCATTTTCTTTCTCTGAGGTTGTCATGTAAATAGgtaaagagaaaaaaaacatattttacaaaGCTCGTATGTAAATAGACCCGGAAAAGATGAGTCTTTTttcaaaagcaaaaacaggctttctTGTTTGAACGCTCTCCAGCtgaaaaaaaagcttattttagTTCTGGTCTGACAGTTCAGTGACGACGTGACAGTGCTCTTTACTATTCATCACTTTACCctcaagaaaacacacacacagtgggcccTTAGGTCACTTCACAGCATTTCAATGGAGGCTGTAATTAAGATAATAGCATGACTTGGTTTTCCCACGGCCCATTGTCCCCCTGGTCCCTTGCTGCGGTGGCAACAGTGTAAACCATTCAATTAAAATGTAATAGGAGGCTTGTTTGCCATTAGCCGAGGGAGCGGCGCACATGCTCTTTGGTGACTGGACTATTCCTTGCAGAGTCGACGTGACAGACGCCGTCGTGCTGCCCATTAGTTTGTAATGACCCTGTCGTTAATTAGTGGCGCTGTGAATTCTGGGAAATATAGTATTTGCCACTGCTTGAGAGCTAGGTGGACTCTGACAGTTAGCTCTGATAGAGTAACGAGGGTTTTAGCACAGGCAGCATACAGTATTTGAGCACTGAAATGGGTGTGATaccgcgtgtgtgtgcgtgcctgtacATAAGTCCATGTGTGCGTGTGCTGTGTGTGTCTTAACCTGAATTTAAAAATGGATTATCATGTATATCGCTGTCATCAATTCTCTGGCTGGAGCGCTCTGCATGTGTGTCTGAGAATCCCTTATACCCCTCTTTGCTCCATAGGTTTTACCCCATAAAACTGGCTTTGTTTTCTCTCCCAAAGCACGATTGATAAACTGTACCTGCAGTCCTGGAGTTGCTCTGTAGCCTGTTAAGACAACTGTAAATAGGGAGCACATTGCCTGATGGCCATGAGATTTGTACATGTTATTTTATATCTGAATATCAGTCTATTCCCCCGTTCCCTCCTCCCACATCTCTCACCCTCGGACTCCGTCTCAGTCTGTCTCCATAGAGAGTACTGGTGTGTTTCTAGCTCTGTGTATTGTGTCCCCGCCTCTTGTCCCCCTCTGGACTCCCCAGACTGAGTGTGCTTACGCAGGGGGTGGAAACTGTTGATGTGGCCGTAGCCTGTGGAACACCCTGTAACAAACCTCCTGTCATTTTATCAGCTGTAAATAAACATGTCCTGGTGAAAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU674317 lncRNA downstream 25890 26703514 ~ 26703748 (-) True G591414
TU674316 lncRNA downstream 28725 26700691 ~ 26700913 (-) True G591413
TU674306 lncRNA downstream 47033 26682281 ~ 26682605 (-) True G591403
TU674247 lncRNA downstream 131541 26597833 ~ 26598097 (-) True G591349
TU674246 lncRNA downstream 132362 26597014 ~ 26597276 (-) True G591348
TU674492 lncRNA upstream 102408 26968177 ~ 27007229 (-) True G591583
TU674631 lncRNA upstream 281468 27147237 ~ 27147476 (-) True G591715
TU674802 lncRNA upstream 398350 27264119 ~ 27264360 (-) True G591882
TU674937 lncRNA upstream 486379 27352148 ~ 27352368 (-) True G592016
TU674996 lncRNA upstream 523453 27389222 ~ 27389538 (-) True G592075
XM_021608973.2 mRNA downstream 144113 26575972 ~ 26585525 (-) False LOC110527590
XM_036983096.1 mRNA downstream 144123 26575972 ~ 26585515 (-) False LOC110527590
XM_036983095.1 mRNA downstream 148845 26575972 ~ 26580793 (-) False LOC110527590
XM_021608972.2 mRNA downstream 158559 26547669 ~ 26571079 (-) True gart
XM_036983092.1 mRNA downstream 589689 26096153 ~ 26139949 (-) True LOC110527587
XM_021608979.2 mRNA upstream 755937 27621706 ~ 27691752 (-) True fam155a
XM_021608980.2 mRNA upstream 837684 27703453 ~ 27707840 (-) True LOC110527595
XM_036983101.1 mRNA upstream 878194 27743963 ~ 27765935 (-) False irs2a
XM_021608983.2 mRNA upstream 916168 27781937 ~ 27785215 (-) True LOC110527597
XM_021608981.2 mRNA upstream 920174 27785943 ~ 27795723 (-) False LOC110527596
TU674230 other downstream 144131 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 571333 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 1184220 25544735 ~ 25545418 (-) True G589705
TU672303 other downstream 1439033 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 1450764 25201406 ~ 25278874 (-) True G589529
TU674725 other upstream 300406 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 617188 27482957 ~ 27483780 (-) True G592298
TU677787 other upstream 2158638 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 2551086 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 2702432 29568201 ~ 29593462 (-) True G594900

Expression Profile