RNA id: TU675449


Basic Information

Item Value
RNA id TU675449
length 2030
RNA type TUCP
GC content 0.43
exon number 6
gene id plekha3
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27854006 ~ 27874521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctagctagctacctaagaAGCAATCCGCTGGCAATTGTTTATTCAACGCCAGTTCAATTACAACAAGATAACAACATGAACGGAATTCACACTGTGTTGTTGGCTGACGCATAGTCATTCACATGGCACTATATACTTTGAGGTTAACATACATCTTTAGTTtggttttagctagctagcatcatGAAGTTGACAAGCTAAATTGCTTACTAGCTTTGGTACGATATCAGTATTAACTAGTGACGAGATTTTTGGGGACGTGGATCGTGTGGTATTTCTGCAAGCTCATTATGGAAGGAGTTCTCTATAAGTGGACAAATTATATGACAGGGTGGCAGCCACGCTGGTTTGTTTTAGACGATGGAATCATTTCCTACTATGATTCTCAAGATGATGTCTGCAAAGGGAGCAAAGGAAGTATTAAGATGTCCGTCTGTGAAATCAAAGTTCACCCCACCGACAATAACAGACTGGAACTGATCATACCAGGAGAGCAGCATTTTTACGTCAAAGCTGTCAATGCTGCTGAACGACAGAAGTGGCTTGTGGCACTTGGAAGTTCCAAAGCTGGCCTTGCTGACACGAGGGCCAATAAAGAAAAAGACTCTGAATGAGGCCTCCTCTTTACTGAGTGCCACGTGTAACACCTTCATCAAAACACTGGAAGAATGTATGAAGATGGCCAACTCCAAGTTCAAGACAGACATGGTGCTGTTGAACCCTCCAGATGACATGATGATGTCCCCTGTTTCTCCGTCCCCAATACAGATGGCCCGGGTCTGGTCTCCCGCCAAAGGAGGGTGTGTTATCAGGTCAAAGGTCAACCCAGAGGAGGACACGGACTTGTTCGGACACAGAGGCTCACAGTGACAGCTGTGTTTACGAGATGGACCGCACTGCTGTGCTGTGTCTCAATGCCAGTGTGAACGGGGACTCCTCCCACAGTATCCCTGAGGAGTGTGGTGCCATCAGTCCTACCAGTCCCCGAGCTATGTCAGACACTCCAGATACTGACCTGTCCATCTGACCTGTCCTGTCACTCACCAAATACATTGCAGTATCTTCAGATAAAGAGACTTtagaagtgttttgtgaatccAGGTCCTGGAGTTGAGATTGGTCGTCTGCTGTCAAGTGACTGGTCCGTCTGGTCAGTAGGCCTGTGCAAACTTGTAGGCATAGTACTGTCTATCTTTTCTGAATAATAACTTGGCTAAAGCGTGAATAGCTGAATGTATCAGGTACTTCAGTTACTCTACTGAAGTTAGACTGATCTGAGGCTACTGTAATGTGAGGTGTTACtaaggttgtgttcattagggcacgcaatggaaaaaagttttaaaacaaaaaaaaaaaaatgagtgTTTCTTATTGAACAACTCTAGTTGTCCTTCCCTGTCATTTTCTTCCCTTCAGTGCCTAATGAACACTCCCCAGCTTTTATTGCTCACATACTGCAATGCAGTCACTGCTTGGCAATGCGTTAATGGTATTTTCAAAAAGTATTGTATTTTTTCCTGTGGAAGCATTGCTTTGCACTTTAAGAATTATGGATCAAAACAAAGTCCTTTTTGAATGTTTGTACTATTCCAGGAAGTTTTATGTTATTATTGCAGAATAAAATGTTTGATATGCAACATTACTGTTCATTCACTATGGAGTGAAAAATTGTCCTTGAAACACAGAGGAGGGACATATTAGCCTTTAACCAAAACCCTTAAACGTTAGGGTTGCTAACTGTGCCAAGGACCAATTCAGAATGTGTGGATGTGGGTACATTTTCATCAATGGGCTGAGTTCACATGCATCTCCTGGTACCCCGGATGGGCAAAGTTTTGTCTATTTTAGACGATTCCATTGGTCCTACAGTGAAATCTCCACCCTCCCAAGTCACTGGGAGATGCAAAACAAACTTGCCCAATATTTCAAATTTGGCACGCCCCCAGTGTTCACCATATTGCTATGTGACAGACactttttattgttatttttttaaagttatgTTTGCCATTCATTACATCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU675421 lncRNA upstream 109173 27741017 ~ 27744833 (+) True G592485
TU675412 lncRNA upstream 119221 27734446 ~ 27734785 (+) True G592481
TU675403 lncRNA upstream 127825 27725904 ~ 27726181 (+) True G592472
TU675378 lncRNA upstream 141219 27712653 ~ 27712787 (+) True G592447
TU675372 lncRNA upstream 151199 27702486 ~ 27702807 (+) True G592444
TU675514 lncRNA downstream 12891 27887312 ~ 27889004 (+) True G592567
TU675529 lncRNA downstream 20622 27895043 ~ 27895354 (+) True G592582
TU675530 lncRNA downstream 22359 27896780 ~ 27897444 (+) True G592583
TU675536 lncRNA downstream 28859 27903280 ~ 27903509 (+) True G592589
TU675537 lncRNA downstream 31782 27906203 ~ 27906471 (+) True G592590
XM_021608978.2 mRNA upstream 299251 27505909 ~ 27554755 (+) False LOC110527593
XM_021608977.2 mRNA upstream 371426 27458694 ~ 27482580 (+) True LOC110527592
XR_005052558.1 mRNA upstream 1258855 26585519 ~ 26595151 (+) True LOC118965273
XR_002474143.2 mRNA upstream 1310322 26535783 ~ 26543684 (+) False n6amt1
XM_036983103.1 mRNA downstream 271115 28145536 ~ 28165219 (+) False LOC100653476
XM_021608991.2 mRNA downstream 271119 28145540 ~ 28168201 (+) True LOC100653476
XM_036983104.1 mRNA downstream 347204 28221625 ~ 28258442 (+) True LOC118965275
XM_021608995.2 mRNA downstream 431846 28306267 ~ 28368030 (+) False LOC110527602
XM_036983105.1 mRNA downstream 431846 28306267 ~ 28368030 (+) True LOC110527602
TU675374 other upstream 146712 27703583 ~ 27707294 (+) True G592445
TU675056 other upstream 370210 27483050 ~ 27483796 (+) True G592134
TU673831 other upstream 1276073 26577407 ~ 26577933 (+) True G590949
TU673811 other upstream 1300464 26552554 ~ 26553542 (+) True G590936
TU672748 other upstream 1828697 26003930 ~ 26025309 (+) True G589933
TU676138 other downstream 960788 28835209 ~ 28841083 (+) True G593144
TU676166 other downstream 1017742 28892163 ~ 28892425 (+) True G593171
TU676297 other downstream 1185277 29059698 ~ 29064592 (+) True G593283
TU676195 other downstream 1455251 29329672 ~ 29363351 (+) True LOC110527619
TU676564 other downstream 1653606 29528027 ~ 29528910 (+) True G593513

Expression Profile