RNA id: XM_021608990.2


Basic Information

Item Value
RNA id XM_021608990.2
length 2903
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110527600
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 27890406 ~ 28034304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacctacctctctctcgatctctcttttAACATAGGAGGACACAGATTCTATTCAGCATTGGGAGggaggagttgtgtgtgtgaatatgtggaCCAGTCTACTGAGCCGAGgaAGTGCCTTCCATAGCAGCTGTCTCCCGGCGTTGGTGCGGACCCCTCCTGTTATGATGCAGTCCACTCTGGATATGAAGTCCTTCATGTCCTTCCCGGTGGACACCACATCAGCAGTGGGACTCTTCCCCAACTTCAACACAATGGACCCTGTGCAGAAGGCCGTAATTAATCACACATTTGGAGTCTCCATCGCGCCGAAGAGAAAGCAAGTTATTTCCTGCAACATCTGCCAACTGCGCTTTAACTCAGATAGCCAAGCCGATGCGCACTACAAAGGCAGCAAACATGCCAAGAAGCTCAAAGTGCAAGAGACGCCTAAACATAAGACCCTGAAAAACAACAGCACACCCAGCCAGGACAGAGGAAAGAGATTCAtgtcctccaccacctcctcttcctcctccagtaTCGCTGTCACTGCCTGCAGCTCTGAACAACCAGTTAAAATAGGGTTACATCCAAACAATCTCTACCCCATGGCGTCTTCAAAATCGTTTTTCCCAGCTGCTGGCCTGGCATTAGCGCCCTCATCTATCCTGTGTAAACCTCTGTGTGAGCCCACACCTGCCAGTCCGGCCCCAGAGATGTCAAAGCCCACCCTCACTAAACCAACCCCAGTGCCTGCTGTGCCTGCTGTGCCTGCTGCCCCCGCCCCGTGCAAGCACTCCGACGAATCAGAGGAGGAGAAGGCCAAGAAGCTTCTCTACTGTTCGTTATGTAAAGTGGCCGTCAACTCCCTCTCCCAGCTTGACGCCCACAACACAGGTTCCAAGCACAAAACGATGCTGGAGGCGAGGGATGGAGCAGGGCCCATCAAAGCCTATCCCAGGCCAGGGGCTAAGCTCAAGGTCCAGGCCACCATCACAAAAGGCTCTGGCCTGCAGAATAAGATGTTTCACTGCGAAATCTGTGATGTCCACGTCAACTCAGAAATCCAGCTCAAACAGCACATTTCCAGTCGGAGGCACAAAGACCGAGTGGCCGGGAAACCCTTGAAGCCCAAATACAGTCCTTACAGCAAGCAGCAACACAGCACCGCCACACTAGAAGCTAAACTGGCATTCCAGAAGGACCTTCTGAAGCCCCTGTCTCAGGCTTTCCTCTCCAGACCGTTCATCCCCACCACAAtaccctccatctccctccacccgCGGCCCAACACCTCCATCTTCCAGAAAGCCGCCCTCCCGACCTCTTTCCTGCGAGCGGCTCCTGGCCCTATCCGGCCAACAGGAGGGTCCATCCTCTTCGCCCCATACTGACCCCTCATCCTGAGCACCAAGGGAGGTCCAGCTTCGTGTGTACAGTGTCCATATTATGACAGCCTCAGAGTCACAAGTAGTTGGTGTCAAACTGTTCCTCAGAGAGCTCTGAGATGTGTATGAGAGGTGTTACCATGGCAATGTTCACACTGGTGCAGTCAGAATTACGGCGCTTGACCCGACAACATGTTTCTCCTAAACATGCTGAACCTTAACTGAGGGGAGCATTGAACTGTCTACACCCTGATTGACTTGAATTACCGCGGTTTCTCGACACAATGTAAGGACAACACCAGTCATGTGTACGTGACCtattaggacagcctcagtgTCAGGACTTCTTTCAATCTCACCTTACACATGATCGGTGTGAATTTGTGGTAGTGCTGGACAGCAGAGGAAGTGCTGTGTTGTTTTAGACCGATGATGGGGGCTAGCTTGTCTCCAGTGTTTGTATGGTGGAGAAAGCTATGGGATACAGTGCCATGATTGACCTCAAATCAGGCTTTTTTCTAACTCTTGTGGGCTGAACAACTGACACCAGCTGCGATTAACTCTTTCAAAATCACAATAAACATCCCTGCAAAATCTGGGATGTTTTCCTTCGGTCCTTCAATTTCAGTGTTATTATAAGATAAACAACTGTTTGTTTTTCCAAAGACAAAATGGAGAATTGCACATTAACGCTGACCTGCCTGTTGTCTGGCAGGGACGTCATGGGCATTTGATTTCTATGTGATGTCAACGTTTTTGTCAGGGCACTGTATTGTGACCCCTTAATGCAATAATGTACAGAGTTTAAGATacgtgtacagtatatacaaaactGTGTTAGGTAGTATTGTAACAGAGTACTAGAAATAGAGTTTATGCACACGTGGTTTGGAGAGTTTGGAAAATACTgctttaaactttttttttaatcaagaAACGAGATATGAATGTTATAGTTGTGCTCCTTTAAGTACGGAATTGTGAGCTTAGGATCAAAATTGAAAAACTGCCATCTCTGGATGATACAGTGATGTCCTTTGCTATGCAAGAAGTTGATAACTATTGTCACTACATTTTAAGCAATATTGTGTACGGTTTTAACCGCGGCAACAACAGCAAGATTTAACCTCTATGGTGTTAATATTGCGACACCCTCATTCTCAGCAGGACTTGTTTCAATCTTAGCAGGACTTAGGCTGTCCTAATATAGACACCGTCAGAATTGATTACAATAGAAGGTGGCTAGATGTTTCTCCACAGGAATTCTTTGAAGgtatgccttcagaaagtattcacacccattgactatttccacattttgttgtgttagaaaAGGGGCTTAAATTAATTGTCATTTTTGataatgatctacacaaaatgtaATGTGAAAGTGGATATCTTTTTTGAACATTTGTAAAAACTattcatgaaaaataaaacactaatatatcttgattagatacagttgaagttggcagtgtacatacatcttagccaaatacatttcaactccgtttttcacaattcttgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU677087 lncRNA downstream 1442 27887303 ~ 27888964 (-) True G593982
TU677068 lncRNA downstream 15892 27871365 ~ 27874514 (-) True G593970
TU676970 lncRNA downstream 146329 27741604 ~ 27744077 (-) True irs2a
TU676986 lncRNA downstream 155399 27734612 ~ 27735007 (-) True G593896
TU675389 lncRNA downstream 177203 27712903 ~ 27713203 (-) True G592458
TU677249 lncRNA upstream 133842 28121003 ~ 28123732 (-) False G594138
TU677250 lncRNA upstream 133842 28121003 ~ 28123732 (-) False G594138
TU677251 lncRNA upstream 133842 28121003 ~ 28123732 (-) True G594138
TU677235 lncRNA upstream 181188 28168349 ~ 28173047 (-) True G594126
TU677328 lncRNA upstream 279580 28266741 ~ 28268690 (-) False G594207
XM_036983102.1 mRNA downstream 36887 27813171 ~ 27853519 (-) True ankrd10a
XM_021608986.2 mRNA downstream 49117 27802077 ~ 27841289 (-) False ankrd10a
XM_021608985.2 mRNA downstream 49117 27813171 ~ 27841289 (-) False ankrd10a
XM_021608987.2 mRNA downstream 49117 27813171 ~ 27841289 (-) False ankrd10a
XM_021608982.2 mRNA downstream 94682 27785943 ~ 27795724 (-) True LOC110527596
XM_021608264.2 mRNA upstream 188872 28176033 ~ 28177839 (-) True LOC110527106
XM_021608998.2 mRNA upstream 312546 28299707 ~ 28306319 (-) True LOC110527603
XM_036983109.1 mRNA upstream 594027 28581188 ~ 28603857 (-) False LOC110527604
XM_021608999.2 mRNA upstream 594027 28581188 ~ 28615568 (-) False LOC110527604
XM_021609000.2 mRNA upstream 594027 28581188 ~ 28615568 (-) False LOC110527604
TU675224 other downstream 406626 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 723938 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 1304899 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 1732101 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 2344988 25544735 ~ 25545418 (-) True G589705
TU677787 other upstream 1037246 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 1429694 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 1581040 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 1602832 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 1608855 29596016 ~ 29599570 (-) True G594905

Expression Profile