RNA id: XM_021608991.2


Basic Information

Item Value
RNA id XM_021608991.2
length 4120
RNA type mRNA
GC content 0.45
exon number 28
gene id LOC100653476
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28145536 ~ 28168201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTGTTAGGTATGTTAGGACATCCTCCTCATACCGCACTATTACCATGTATCCGAAGATGGAGCAGCAGGGGAGGAAAGCCCCCACAGATGTTTGAGCAAGATAACATTCGGTTAATTTTGATCTTTGGAACGCTGCTACATTTATCAAAAATGACTACATACGGGCTAGGCTTACACAGCATAGGGCTAAACATGTTGTTTTGCTTTCTCTTACGTCATGCCGATTTGTACAATTTAGACATACCGCACGCTATTCCACTCAGTGGTCCGAATGGAACATTTTTTGGATATTCTGTGTTGCTACACAAGCATCAGCAACAGACATGGGTAATAGTTGGCGCACCAGTTGCAAATTCAAGGTTCAACCAGGCTGTCAGGAATCCTGGAGCAATCTACAAGTGCAAAATTACAGACAAGAAGGACTGTGAACAGATTCAACTCGGTGTAATGCTTGACATGCCCTGTGGCAGACACTGTTCTGCTGAGGTTGAAAACCAGTGGCTTGGTGTGAGCCTCTCCAGGCGGCAGCAGGATGGACTTGTGTTgGCCTGTGGACATCGTTGGAAAAATGTCTACTTCACCAAAAAAGAAGATCTAAATAAGTTGCCACATGGCGTATGCTACAAATTGGAGTCTGACTTGAATCAATCAAGTCCTTTGATTCCATGCTACAGAGatcACGAAAATAAGTTTGGCAATGACTTTGCGTCATGTCAAGCAGGGATTTCAAATGTCCTTATTGGGGACCTCATAGTAATGGGAGCCCCTGGAACCTTGTATTGGACTGGGTCTGTTTTTGTCCACAACATATCCAGTCAGGTCACTTCTGCCTACTTGGATGATAACGTTGTCCTCTATGGAAGTTATTTGGGGTACTCAGTCAGCGCTGGCCACTTCCTGCACCCAAACTCCACTGAGGTAGTGGGTGGAGCCCCCCAGTACGGACAGACTGGAAGAGCCTACATCTTTAGCATAGAGTCCAGCACACTGAGCATCATCTCTGAGGTTAAAGGTCAAAAGCTGGGTTCCTATTTTGGGGCCACTGTGTGTGCGGTGGACCTGAACACTGATGGCCTGTCTGACCTGCTGGTGGGAGCTCCAATGTTCAGCGCTGTGAGGGAGGAGGGCCGTGTGTACATCTACATGAACCAGGGACAGGCTAACATGAAGGAGATGGAGTTTACATTAGCAGGGAGAGATTCATATGCTGCCCGGTTTGGGGAAAGTATCACAAGTCTTGGAGATATTGATGATGATGGCTATCCAGATGTTGCAGTTGGGGCACCACAAGAGGATGACCTACATGGTGCTATTTATATCTACAATGGGAGGAAGACGGGACTTGAACAATACTTTTCTCAAAGGATTGCTGGGTCTGCCTTGGGTAATGCTTTCAAGATGTTTGGCCAGTCTGTGTCTGGGGGCATTGATGTTGATGGAAACGGTTACCCAGATGTGGCCGTAGGAGCCTTTCTGTCCGactctgctgttgttctgagGACACGGGCGGTTGTTGTGGTGGAGGCGACGATACTTCTTCCTCCTAGTGTGAACCGCACCCATGCCCTGTGTACAGAGAACGGCCAGCCTGCCGTTTGCCTCAAAACCTCTGTGTGCTTCCAGTTGCACGCGAAACGTGTCTCTGGGCTCATCGAAATACTGTACAACCTGACGGCTGATGTCAAGCACATAGAGGGGCTCCAGTCCAGATTCTTCTTCAACACCAACGGCACAGAGTTATCAAATGCCACAGCAGGCAGCATCAAGACCAGGCATGGCCACATGACCTGTGTTACCCACCTGGCCTTTCTGAGGagagacattcgGGACATCTTCACCCCCATCCACTTTGAGCTGCAGTATGAGCTGGGAGAGCACAATGTGGTGAGGGGTAACTACAAGAGCTTTCCCCCTCTCAGGCCTATGCTCCAGAGGGGAGAGGAGTCCAGCAACTTGCTGACCAACAAGACTGTATTCACCAGGTACTGTGCCTGGGCCAACTGTTCCACCAATCTGCAAGTGTCTGCACAGCTGCTGTTACCGAGGACACATAGAGACATGCCATACGTTGCCCTGGGGGAGGGGAAGACCATTCTACTGAATGTTACGCTGTCCAATGCTGGCGACGCTGCCTTCCTCCCCATGCTTCACCTGAGATACCCCAGCAATCTCTACTTCATCAAAGTGTTGGACGCTGAGGAGAAATACGTGAGCTGTAAAATTGCTGAGGAAGAGAAGACAAGTGTCGGGCTAGATTGCAGCGTGggaaatttgtttttcaacacctTAGCCAAAGTTAATATCAGCTTTCTGCTGGATGTCAGTGCTGACAGTGAACCTGGTGACCTGAACATTATAATCAATGCAACCCGggAGAATTTAGAAAATGAAGATCTTCTCCATGACAATATTGTTAATCTGACTCTGCTATTGAGATATGGAGTGAATCTAAACATCCACGGTTTTGTATCCCGAACAGAGTTTGTGTTTGGGGACTTTGAGGAGCCACACTGCTCCGCTGAGAGGTTCAAATACACTTTCAAGGTTGTCAATGTTGGTCCAAGCATATCTCACGGCACAAGAGTGGAAATTGATATCCCCAAAGCTTTAGCACCGTATCCATACAGACTGCTCAACATTTTGGACATACAGTCATCTTCTGGGTGGTGTTACATTCGAAACTCCACTGATGGGACCAGCAGTACACATGGCAACATGTATGGAAGCCAGAGAGCCAGTACCATTGACAGTGTTTGGTTAAATGTGACAACTACCACTGACAGCTATTGGACGAATAGGTCCAGCACCACACACCCTTATTGGACTAATATTTCCAGTACCACTGACACCAATTGGACTAGTATATCATATTGGGCCAATGTGAGAAACTGGACCACTGTTATTGAGGATGAGTGTGATCTGCCTGACTCCAATCCCTTGAATGAattattcttcttcttctcgAAAAGCAGTAGAAGACATATGTATTGCATGAAAGAGGATGCTCTGTGTCTGTACGCGGTGTGTGAGCTTGGAGACATGGACATTGGGAAAGATGTCACCATTGAAATGGAGGTCGAAATGAATTCGGGAGTTTTAGACATCTCACCGGGAAGACATAGTGTCATGCTGTTAGAGACCACTGCTGTCATATCACCCAAGAAGGACCCATTTATTTGGTTCTTAAAAGAAGACCCCATCACAGTGGTTGTCCTGGAGGCCCATCATAGCCACAAACTGAAACCAGTCATTGAGCTGTCCATCATCGTGGCCAGTCTCTTACTAGGCCTCTTCATCCTTGCCTTGCTGGTCATCTGCATGTGGAAGAGTGGCTTCTTTAAGCGTAAGTATGAGGACAAGATGGAGAATATACAAAGGCTCAGCTGGGACTACTGAGGACGGACATTGATTCATATCAAATACATGACACAATATCATAGCTAAATGGGAAATTCAGTACAACAtaatgttagatggttcctcaacCTGAAAGTAGTCTAATCATCTAAAATGAATTATATTTTCTGACACCCTGTAGTCACATTTTGAAACCAgtagactaactagctagctagctagctatgtaaacCACACCCTTCTGCGAACACGCCTTCTGCAATGATGGCTACAAGGGAGTACAtatttaaattaggtaagagTATAAGATATTACCATTGGTGTATAAAAATGACCGGCTTTATGTGGTGTCACACAAAGCCTTAGCTTTTGGATGAAGCCAGTAACCTTATGGTCAAACGTTATTGATGTACCAGCCACAGTAATTTTTCAGTCTTTAGTCATCGTACTATgatctggtttcatccaaatatcgTCCGATCtgatgaaaaacatgattttgactgtttGTGACCTTTAAGTTTTAAAATattgaacttcccctttaatcaGTGACTGAAGATTGATTGACCCACTGTACAGTGTCtcgcaaaagtattcaccccccttggcgttgTTACTATTTTGTGCCATTACATCCTGTAATttcaattgatttttatttggatttcatgtaatggacatacacaaagtagtccaaaattggtgaagtgacattttttaaattacttgtttcaaaaaaacatttatttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU675633 lncRNA upstream 7178 28022903 ~ 28138362 (+) True G592684
TU675711 lncRNA upstream 21858 28120990 ~ 28123682 (+) False G592746
TU675712 lncRNA upstream 21858 28120990 ~ 28123682 (+) False G592746
TU675713 lncRNA upstream 21858 28120990 ~ 28123682 (+) True G592746
TU675632 lncRNA upstream 61519 28022903 ~ 28084021 (+) False G592684
TU675651 lncRNA downstream 1345 28169546 ~ 28172955 (+) True G592699
TU675965 lncRNA downstream 386529 28554730 ~ 28555209 (+) True G592990
TU675968 lncRNA downstream 390484 28558685 ~ 28559022 (+) True G592993
TU675981 lncRNA downstream 398629 28566830 ~ 28567405 (+) True G593005
TU675982 lncRNA downstream 399897 28568098 ~ 28578328 (+) False G593006
XM_021608988.2 mRNA upstream 271019 27854298 ~ 27874521 (+) False plekha3
XM_021608978.2 mRNA upstream 590785 27505909 ~ 27554755 (+) False LOC110527593
XM_021608977.2 mRNA upstream 662960 27458694 ~ 27482580 (+) True LOC110527592
XR_005052558.1 mRNA upstream 1550389 26585519 ~ 26595151 (+) True LOC118965273
XM_036983094.1 mRNA upstream 1601856 26536072 ~ 26543684 (+) False n6amt1
XM_036983104.1 mRNA downstream 53424 28221625 ~ 28258442 (+) True LOC118965275
XM_021608995.2 mRNA downstream 138066 28306267 ~ 28368030 (+) False LOC110527602
XM_036983105.1 mRNA downstream 138066 28306267 ~ 28368030 (+) True LOC110527602
XM_021609004.2 mRNA downstream 498215 28666416 ~ 28686793 (+) True mtx2
XM_021609008.2 mRNA downstream 586275 28754476 ~ 28769421 (+) False LOC110527611
TU675449 other upstream 271119 27854006 ~ 27874421 (+) True plekha3
TU675374 other upstream 438246 27703583 ~ 27707294 (+) True G592445
TU675056 other upstream 661744 27483050 ~ 27483796 (+) True G592134
TU673831 other upstream 1567607 26577407 ~ 26577933 (+) True G590949
TU673811 other upstream 1591998 26552554 ~ 26553542 (+) True G590936
TU676138 other downstream 667008 28835209 ~ 28841083 (+) True G593144
TU676166 other downstream 723962 28892163 ~ 28892425 (+) True G593171
TU676297 other downstream 891497 29059698 ~ 29064592 (+) True G593283
TU676195 other downstream 1161471 29329672 ~ 29363351 (+) True LOC110527619
TU676564 other downstream 1359826 29528027 ~ 29528910 (+) True G593513

Expression Profile