RNA id: XM_036983107.1


Basic Information

Item Value
RNA id XM_036983107.1
length 2899
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110527604
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28581188 ~ 28615643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCctaaggatcccagatagcaccAACCCTGCCCCATCCTTTTCTGAGCAGCGTCACATGCTTTCTAACGGCGGTGGAAATAGTCATATTGCGCATCAGTTATCGCACCAAGAATGGCTCTAAATGTCTTTGACCATGATGAATACAGGCCGCCAGTGTGGAAATCTTACCTGTATCAGCTCCAGCAGGAGGCACCACATCCACGGCGACTGACCTGCACCTCTGAGGTGGATAACCGGCCCAAATACTATGGGAGAGAGTACCATGGGATGATCTCCAGAGAGGAGGCTGACCAGCTGCTGAGTGTGGCAGAGGGGAGTTACCTCATCAGAGAGAGCCAGAGGCAGCCTGGGACCTACACACTGGCCCTACgATTTGGAAATCAAACCAGGAACTTCCGCCTCTACCGTGATGGGAAACACTTTGTTGGGGAGAAGCGCTTTGAGTCCATTCACGACCTTGTGACAGATGGGCTGATCACGCTCTACATCGAGACCAAGGCAGCAGAGTACATCGCTAAGATGACCATCAACCCAATCTATGAGCACATTGGCTACACAACACTCAACAAGGAGCCCACGCTGAAGAAACACTTGCCTGTGTGCCAGGAGGTTCCTGATGGGCCTGCGCCACAGGGAGGGCTGGGTGACGAGGAGAAAGGGCTCACCTCACTGGTCCGCCGAGCCACCCTGAAGGACAACGACCACGCGACCAAGTATGAGAAAGTCCACAATTTCAAGGTGCACACCTTCCGGGGACCCCACTGGTGTGAATATTGTGCCAACTTCATGTGGGGCCTCATCGCTCAGGGAGTTAAATGTGCAGATTGCGGTTTGAATGTCCACAAACAGTGTTCCAAAATGGTGCCAAACGACTGTAAGCCTGACCTCAAGCATGTCAAGAAAGTATACAGTTGTGACCTTACGACCCTGGTAAAAGCCCACCATTCCAAGCGACCCATGGTGGTGGACATGTGCATACAAGAGATTGAGTCTAGAGGTGTTCAGTCTGAGGGCCTGTACAGAATCTCAGGCTTCAGTGACCTGATTGAAGATGTGAAGCTGGCTTTTGACAGAGATGGTGAAAAGGCGGACATTTCTGTGAATGTGTATGAAGACATCAATATAATCACTGGCGCACTGAAACTGTACTTCAGGGATTTACCTATTCCTCTTATCACGTATGAAGCCTACCCAAGGTTCATGGAGGCAGCAAAGATTACAGATCCAGACAAGCGGTTAGAGGCCCATCATGAAGCTCTGAAGCTGCTGCCACCTGCACACTGTGAATCACTGTGTTATCTCATGGCCCACTTAAAGAGGGTAATCCAAAATGAGAAAGACAACCTGATGAATGCAGAAAACCTTGGCATTGTTTTTGGGCCCACCCTCATGCGTGCCCCAGACCTGGATGCGATGACGGCGCTCAATGACATCCGTTATCAGAGACAGGTGGTGGAGACGCTTATAAAGAACGAAGATATTCTGTTCTGAAAGGGGATGATTAACAATGAAGGAATCTTAAATCATGAATAAGCGATGTACTCATCATTTAGAATGGAGGAAGTGATGATGTTTTTAATATTTTCCCTTTTTAAAACCAAGACTTGAATAATAATGCACCATTGTACATTCTCTTCCACTCCCAGTGAGCCCTGTCTGAAGAGATGTCTGTTGGGTTTGAATCACGTACCTTAGACTTGTCTTTTGcatgttcaccccccccccccccatttgtgtCGGGGGTAATTGATGGAACACACATTCCTTTGGATAGTTAGTATGCGTTTTTGTTTTCAGATATTGGGTCACACCAAAGGGAGAGAGGACTCAACATTATCTCTGACATTATAGTGTCTTtgacagcatgggcagtgccattgatgctacaacccataggaatccccatCCAGTTGGCTACTTTTAATAGTTTGAAATGGCGGAggcatggtggaagccctcaatggcaatgtccatgccaAAATGggttatatccatgatgagtcctctctCTATGGATCACAATCACTCATTATCTGCTCTCTGATCTTGTAGATGTGGCTCATTTGTTTCATGATGGGTTTATTCTTCCTGTGAATCACTAATGTACCTGGATGTAACACAGAATACTATCGGTTAAAAACCTTGTTTATTTTGTTTAATATTGTATGTTGTTCTTTTACGTTCATTTAAAAGAAATGCAATGGGATATTtatataatttcagccagtagttctaAAAGTAGCCTAGCACTCACATGCCATAACGGGTGCCTTAAATGTATTATGTTATATTAACGGTGTGTCCCATGTACATCTGCACTTCATTTATATTATAATGGCGTGCCACACTATTGGCACTCACTGCCCCTATTGTCAGAGTATCCAATGTGCCCAAGTGATCGAGCCTCCCACTTTTACCTTGCAGCGTCATTGTATGTGATTGTGCCTTTCAACGGTCCTATCAACATTGTCCACCCGCTTTGGTTGTTTGAAGTATCCCTTTATTCCTTGGTCAGACTATGGCATAAAACTTTTCTAGTTTAAAAAGTATAAATGGTATCAAATAGCTCAATGGATGCAAAGTTGAGTCAGTCTGGTTTAATTCGAACCTAACTAACCAGTTTTATTACAATGGGATGCCCATCCACAGTGGATGGCCCATTATCAGGAAATGAAGTATGCTAAGCCTGTGACAAGGTCTATGAGAGGGTTTTGTGCAAGCAGGTTCAGTCATGTATCCCAATGTTGCAGAACAGTGTAGCTTAACAGGAAGAATAAACCGATATGACATGCCGTGTTCATATTGCTATCAAAATATTAGATGTATATCAAATTATCAATATTGGTGCCCACCACCAAAaatgtagggccctataaaatcactTTTTTTCCCCCCCC

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function
GO:0001565 phorbol ester receptor activity molecular_function

KEGG:

id description
K20630 CHN1_2, ARHGAP2_3; chimaerin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU677512 lncRNA downstream 22853 28557230 ~ 28558335 (-) True G594377
TU677511 lncRNA downstream 24279 28555894 ~ 28556909 (-) True G594376
TU677510 lncRNA downstream 26155 28553792 ~ 28555033 (-) True G594375
TU677535 lncRNA downstream 34248 28546740 ~ 28546940 (-) True G594400
TU677529 lncRNA downstream 41981 28538950 ~ 28539207 (-) True G594394
TU677558 lncRNA upstream 41441 28657084 ~ 28657386 (-) True G594423
TU677559 lncRNA upstream 42617 28658260 ~ 28658569 (-) True G594424
TU677564 lncRNA upstream 50297 28665940 ~ 28666289 (-) True G594429
TU677573 lncRNA upstream 70527 28686170 ~ 28686779 (-) True G594438
TU677491 lncRNA upstream 74070 28689713 ~ 28690610 (-) True G594356
XM_021608998.2 mRNA downstream 274869 28299707 ~ 28306319 (-) True LOC110527603
XM_021608264.2 mRNA downstream 403349 28176033 ~ 28177839 (-) True LOC110527106
XM_021608989.2 mRNA downstream 546884 27890406 ~ 28034304 (-) False LOC110527600
XM_021608990.2 mRNA downstream 594027 27890406 ~ 27987161 (-) False LOC110527600
XM_036983102.1 mRNA downstream 727669 27813171 ~ 27853519 (-) True ankrd10a
XM_021609002.2 mRNA upstream 1485 28617128 ~ 28619846 (-) False atp5mc3b
XM_021609001.2 mRNA upstream 1485 28617128 ~ 28619938 (-) True atp5mc3b
XM_036983112.1 mRNA upstream 11746 28627389 ~ 28646188 (-) False lnpk
XM_036983119.1 mRNA upstream 11746 28627389 ~ 28646865 (-) False lnpk
XM_036983117.1 mRNA upstream 11746 28627389 ~ 28647038 (-) False lnpk
TU675224 other downstream 1097408 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 1414720 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 1995681 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 2422883 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 3035770 25544735 ~ 25545418 (-) True G589705
TU677787 other upstream 408764 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 801212 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 952558 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 974350 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 980373 29596016 ~ 29599570 (-) True G594905

Expression Profile