RNA id: TCONS_00036360


Basic Information

Item Value
RNA id TCONS_00036360
length 733
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_017074
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1663759 ~ 1725048 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacacacacacacacacacacacacacacacacacacacacacattcatacattcaCTGACCTTCACATAAACATTTAGTCTGAGTGTCTGGATGAcagtaatgtttgtgtgtgtgtcgctGGGAGGAAAGTAGAGAACGTGAGCAGGAGTGAACATGTTTCCAGTGCAGATTTTATAGACTGAGGTCAACACACACTCACTGGCAAAGAGTTTAAGCATGAgacctcaacacacacacacacacactggcttcTGTGTGCTTTTCTCTGTGGAGGCACTTCTGTTGTTTTCAGCCTCCAACAGAGTCAAAGAGAACAGTCTAGAAGAgcacaatgacacacacacacacacacacacacacgcacgcagctCACAaaccatcaacacacacacacacactgacaaagaAAGAGATTTCTCCATAAAAACAGCCATGAGTGAAGTTGTACGGTAAAACCGTGTGCTCGTGCTCCGCAGAAAGGTGCGCATGCATTCAAAGCAACAGCCGTTAAACTTTTGCCCGTTCCGCTCCGGGGATCGGTAAAGGTGAATCTTTAGGCACTTACCGGGTGTGTACTGGGCTCCTGCGCCCCCAAACACCGCAAGCAGGAGCAATGTGCTCAAAATGATGATATCCATATCTGTCGGCCGAGTTGAGAAAGTTTGTAAAAGTGTTGGGAAATGTTTCTTATTCCAGCCGATCCGCGCGCCCCATGCTCTCTCTGCGCGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036538 lncRNA upstream 308076 1354663 ~ 1355683 (+) True XLOC_017070
TCONS_00036537 lncRNA upstream 459885 1200292 ~ 1203874 (+) False XLOC_017065
TCONS_00036536 lncRNA upstream 459957 1200292 ~ 1203802 (+) False XLOC_017065
TCONS_00036535 lncRNA upstream 460156 1200292 ~ 1203603 (+) False XLOC_017065
TCONS_00034075 lncRNA upstream 461577 1200366 ~ 1202182 (+) True XLOC_017065
TCONS_00036361 lncRNA downstream 436034 2161082 ~ 2162367 (+) True XLOC_017081
TCONS_00036362 lncRNA downstream 488641 2213689 ~ 2214421 (+) True XLOC_017082
TCONS_00034099 lncRNA downstream 536885 2261933 ~ 2266612 (+) True XLOC_017084
TCONS_00036539 lncRNA downstream 556576 2281624 ~ 2284813 (+) False XLOC_017085
TCONS_00034100 lncRNA downstream 556787 2281835 ~ 2284813 (+) True XLOC_017085
TCONS_00034088 mRNA upstream 242754 1412193 ~ 1421005 (+) True XLOC_017073
TCONS_00034087 mRNA upstream 257451 1398564 ~ 1406308 (+) True XLOC_017072
TCONS_00034085 mRNA upstream 270739 1385674 ~ 1393020 (+) False XLOC_017071
TCONS_00034082 mRNA upstream 313463 1329509 ~ 1350296 (+) False XLOC_017069
TCONS_00034084 mRNA upstream 313597 1349043 ~ 1350162 (+) True XLOC_017069
TCONS_00034089 mRNA downstream 109214 1834262 ~ 1891596 (+) True XLOC_017075
TCONS_00034090 mRNA downstream 178433 1903481 ~ 1979652 (+) True XLOC_017076
TCONS_00034091 mRNA downstream 235044 1960092 ~ 1964823 (+) True XLOC_017077
TCONS_00034092 mRNA downstream 271154 1996202 ~ 2035120 (+) True XLOC_017078
TCONS_00034093 mRNA downstream 314470 2039518 ~ 2054547 (+) True XLOC_017079
TCONS_00034086 other upstream 271104 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034041 other upstream 1345654 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034116 other downstream 1183503 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 3349876 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 3381520 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 3698914 5423962 ~ 5424096 (+) True XLOC_017119
TCONS_00034155 other downstream 3948982 5674030 ~ 5697001 (+) True XLOC_017120