RNA id: XM_036983116.1


Basic Information

Item Value
RNA id XM_036983116.1
length 2508
RNA type mRNA
GC content 0.44
exon number 13
gene id lnpk
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28627389 ~ 28647053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAAGCCCGTGGGGGGCCCAAGCGCCACCataaagaagtgttaaacaatatattttagatgtttcAAAGTATCTATCCTTTTGCTttataacagctttgcacacacttggcattctctcaaccaactttatGAAATGGAAAGCATTTCAataaggtgtgccttgttaaacgttaatttgtggaatttattgactgggccaattgtgcgccgccctatgggactccagatCACGGTCTGTTGTGATTCAGCCCTCAACATAATTGTATAGACTAACGTAACATAATTAGGTAGGAGGGTTTAggtgttttgtgtttattttctttTATACTGATGTAGCCAGAGCTACTACTGTATGTAGTGTAGTAAACCATGATTACCacgcacagtaggtggcggcatggaCCCTAAACGTTTGTTCGCGGACCGCCATTCTACCATAAGAGAAAAAGACGAGGAAGAACCCGTTCGAACCCCCCGTATTGTTATTGACTTTCTTGCATGACACGGACCTATCTAACGTGAAATAGCTATCAAGCAACCGCAGCTAGCTAACGTAAAGGAAAGAGTGGACGAGGAGCGGGACACACCATACATTCTACAGAGATGGGCGCTGTTGTTTCCCGGTGGAAGGCTAAACCAACGACGGTGGAACTTCTAGAAGGCATTGACAAGGATATTAAGGACCTTGAGGAATTTAGAGCGAAGAATCAGAGATTGGAGAAGTTGTGGGTGGGAAGACTGCTTCTGTATTCATCTGTGCTTTATCTTATTACTTGCATAAGTGTTTACTTCTGCTATCTCCCCGAACAATGGACAGGACGCATCGTGATGACTTTGCCCTTATTTCTATTTCCTATATTAGTGTGGTTTATGAGGAAGCTGCTGTTATTCCTTTTCTCAAAGCGAACGGAAAGAAACAATGACAAACTAGAAGATTTAAAAGTTGAAAAAAGAAAAATTTTGGAAGAGGTGATGGAGACTGAAACATACAAAAATGCCAAGTTAATTCTTGAGAGGTTTGATCCTGAAGCAAATAAGAAAGTTGAAATGGAATTCACGCCAATCAGGCCAGGTCAGATGACTCCTAGACCGGGCCAAGGTGAAGAACTCCGTCAACGCAACATAGCCTTGAGGCCCCCTGTCATGGGTGCTGGAACCACCCCTACGGGTCCCCTTCCTCGCTCAGCCCCAGGTGGGCCCCCAGGAGGACCCCCGGATAGAGGCCTGTCTGCCGCAGTCTCCCAGCAAACCATGATGAGGAGACCCCCTATGACACCCTGCACCCCTATCCCAGGCATGGGTATGCACCCCCCAGGCCCACCCCTGGCTAGACCCGTCTTACCTCGAGACCGAGGTGCTGTGGACAGAGTCATCGAATACCTTGTGGGAGATGGCCCTCAGAACAGATATGCCCTTATATGCCAGCAGTGCTTCTCCCATAATGGTATGGCATTAAAAGAGGAATTTGAATATATTGCTTTCAGGTGTGCTTACTGTTACGTCCTGAACCATGCAAGGAAGACCCGACCTCAAGCTCCAAGACTCCCAGAATTTAGCTTTGAGCGGAGAATGCGCTCGGAATCACCCACCCCAGAAAAATCTGCAGCATCAGAGGCCACTGATGAGAGCGCACCCCCCTCTGGAGATGAGAAGGAGCTGGAGGCCCCTTCTGATGAAGTAGAGCCTGAAGTTGAAAAGGCCCAGTCTACAGAGGAGACCCCAGACGCCAACGTAGAGAACCCAGAGGCCGCAGAGACGGTACACACAGAAGAGGAGCCTGAGAGACCAGGAGAAAAGCAAGAAGTCCCCCAATTGGAAACAGAGTAGAAAACATTGAATTCCTACCCTCCCCTCTGTATATCAGCTGACATGGTGCAGTGTTTGTTTAAAAATCATGTGGTACCCAGCTCCTGGATTTACATAAGATGCTTGTAATGCACAATATTCTTTGGAAGTGAAGTAATAATCTAGAATTTACCACTTTTTTTCTCACTTAAACCATAACTTGGCAGGTGTGAAAGAGCATTTCTTACATTGACTTTGATTACATACTTGCCAAATCCATGTTTTCTTTTGAAAAGATACATTTGCCAAATGCACTGGTCCGGTCTGTCTTTCATGATTTGCTCTGATTGTGTTATTCATTAGGCTACACAATAAATAGTTAAGACATGTTTTACATTTATTTACAGCAGTTCTGGAAATATTGAAACTTATTCAATCGTAAGCCTAGTCGGGCAAAACTTTTGTTTACAGAGTGAAAGTAGAATgaatattatttatattatttattctGGCCAAGAAGCAGTTCCACATATCTTCTTTCAAGCCTGTGTTATGTTCAGCCATgaagtaaataaaaaatatattttgtgttgGAGCTGAATTTGTATGTCAGGTTTTTGGCCCACCAAATCTTTGCAAATGCCTGTTTTTATTAGTATGTAGATGGCACGCCaaataatgtttgtttttttaataaaataaaagacATGTTCTCAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU677512 lncRNA downstream 69054 28557230 ~ 28558335 (-) True G594377
TU677511 lncRNA downstream 70480 28555894 ~ 28556909 (-) True G594376
TU677510 lncRNA downstream 72356 28553792 ~ 28555033 (-) True G594375
TU677535 lncRNA downstream 80449 28546740 ~ 28546940 (-) True G594400
TU677529 lncRNA downstream 88182 28538950 ~ 28539207 (-) True G594394
TU677558 lncRNA upstream 10041 28657084 ~ 28657386 (-) True G594423
TU677559 lncRNA upstream 11217 28658260 ~ 28658569 (-) True G594424
TU677564 lncRNA upstream 18897 28665940 ~ 28666289 (-) True G594429
TU677573 lncRNA upstream 39127 28686170 ~ 28686779 (-) True G594438
TU677491 lncRNA upstream 42670 28689713 ~ 28690610 (-) True G594356
XM_021609001.2 mRNA downstream 7451 28617128 ~ 28619938 (-) True atp5mc3b
XM_021609002.2 mRNA downstream 7543 28617128 ~ 28619846 (-) False atp5mc3b
XM_036983107.1 mRNA downstream 11746 28581188 ~ 28615643 (-) True LOC110527604
XM_036983108.1 mRNA downstream 11796 28581188 ~ 28615593 (-) False LOC110527604
XM_021609000.2 mRNA downstream 11821 28581188 ~ 28615568 (-) False LOC110527604
XM_021609007.2 mRNA upstream 50037 28697080 ~ 28701886 (-) False LOC110527610
XM_021609005.2 mRNA upstream 50037 28697080 ~ 28724256 (-) False LOC110527610
XM_021609006.2 mRNA upstream 50037 28697080 ~ 28724256 (-) True LOC110527610
XM_021609010.2 mRNA upstream 142935 28789978 ~ 28811952 (-) True LOC110527612
XM_021610958.2 mRNA upstream 204196 28851239 ~ 28860855 (-) False LOC110528825
TU675224 other downstream 1143609 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 1460921 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 2041882 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 2469084 26157993 ~ 26158305 (-) True G590443
TU672491 other downstream 3081971 25544735 ~ 25545418 (-) True G589705
TU677787 other upstream 377364 29024407 ~ 29026049 (-) True G594636
TU677925 other upstream 769812 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 921158 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 942950 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 948973 29596016 ~ 29599570 (-) True G594905

Expression Profile