RNA id: XM_021609022.2


Basic Information

Item Value
RNA id XM_021609022.2
length 2654
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110527621
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29087111 ~ 29099411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctccttcaacaacaacagctagtcAGACACTTCGGTAGCTTTCTAGCAAACATAGCTACAACATTCACGCTCTTTACACTGTTTTTGGTGTATATTAGTCGCTGTGTATTAAACACACTTCTGTCGTATGTACTTGTTGGCCCATTTAATTATATGTTTACGTTGTTTGTCAGCTAGCTGGTTTGCTAAGTTATCTTAGAACTaagctagtcgctaatgctagctagctaacatccccgaccatgagttcaccaagctactctcctcctgataaagaagaggtctgctggacggagaaagaagctttcgtcaaagaggaggaggaagagaaggatgttacaatacaaaaagaagtagagggtgaggctgttaccgtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagagaaagaggaggaggatgcagtttatggagtgaaagagaagggggagatgaCGGTCAcattggaggaagaagaggagaatgGAGATATGTTTAACACCAgagagatatgggactatcgtggatcctctggggagcctcaacaacctcatgatgctgaagAGGCAGAGatgagtctctccagatcagaacacctcaatAAACACCTGCAGAGATCCACAGGGAAGAGacctcactgctgctctgactgtgggaagagattcacctcCTCATCAGGCATTAAACTTCAtcagagaatccacacaggagagaaaccttatagttgTGGTCAATGTGGAAAGAGGTTTACTCAGTCAACAggcctgatatcacaccagagaatacacacaggagataaaccttatagctgtgatcaatgtgggaagagttttactacatctagcaCTCTGACCTTACAcctgagaatacacacaggagagaaaccgtatagctgtggtcaatgtgggaagaggttTACTCAGTCAACcggcctgatatcacaccagagaatacacacaggagataaaTCTTATTGCTGTGATCAATGTGAGAAGAGTTTTACAACATCTGTCTCTCTGACtttacaccagagaatacacacaggagagaaaccttatagctgtggtcaatgtgggaagagttttggtcaaTCTGGCAATctgacagtgcaccagagaatacacacaggagataaaccttatagctgtgatcaatgtgggaagaggtttaccacatctgtctctctgacagtgcaccagagaatacacacaggagagaaatcttatagctgtggtcaatgtgggaagagttttggtcaaTCTGGCAATctgacagtgcaccagagaatacacacaggagagaaaccttatagctgtgatcaatgtgggaagagttttactacatctggctctctgactttacaccagagaatacacacaggagagaaaccttatagctgtgatcaatgtgggaagagttttactacatctggctctctgactttacaccagagaatacacacaggagagaaatcttatagctgtgatcattgtgggaagagttttactacatctggctctctgacagtgcaccagagaacacacacaggagagaaacctcgtAACTTATAACTGttgtcaatgtgggaagagttttactacatctagccAGCTGACTTCACACACAGGAGAGACATCTCTTAACtataatcaatgtgggaagagatactctgataaaagttctctgattaaacatcagaaaatacatgaaggagttgtttcatgatatcaatgaaataATGACACAATgcagaatgttttaacattgtagtaggagtgttttaatgatgtcacaatgtagaacccTAATCGTTTGCCCCCTGTTCTATTGATTTAAGCATTatatggatattagcctcagggtgaaaatccaggctctgaattgaaagaCTACTATTTATGTGATATAACAAAAGTGACTAACGAAAAAAGAGTTGTGTTACACTTAACAcgttggtgacccacttgaatcaaaatgcaacactgcaaaatgtttaggttttcaatatatccaaactgtttctgcatattggttattgatttgaACATGTTAAAACTGTGTTTTTACATTACGCTATTCCAATTTagcaaaatgtaattgaaaagaaGACTATGCCCCAAGTCCAATATACGTTCGGTTGAAAGTGAAAGTTGAGAAGATGTATTTTCCGGTAGTTTTTTCAATGACTTAAACATCTTAATTTCAATGTTCTTGCAGCCTATACACATGGACACAGTATAATAAATTGGTCTATAATACATTTTATTAACAATCCTACATCACTCCAGCATTTCTTGACAACATTCAAGTGCTAATTGTCTTTTTTCCACTACTGAAGTAACATGACTCAAGTCACTTTATATTTCAAACATTCAGCCTGacaaaatatacatgttttattattccatGCCTCACCATTAAGTGAATTATTGCCAATACATATTAACCTTTCTAGGGCGGAAACCCTCAACAACATTCCGCCGAAAAGGCAGcttgcgaaattcaaaaatattttttacaagtATGTAAccttcacacattaacaagtccaatacagcaaatgaaagataaacatcttgttaatcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU676309 lncRNA upstream 2581 29084204 ~ 29084530 (+) True G593295
TU676305 lncRNA upstream 6313 29080591 ~ 29080798 (+) True G593291
TU676285 lncRNA upstream 27536 29044445 ~ 29059575 (+) True G593274
TU676231 lncRNA upstream 45144 28949005 ~ 29041967 (+) True G593224
TU676187 lncRNA upstream 51764 29026862 ~ 29035347 (+) True LOC110527620
TU676325 lncRNA downstream 4824 29104235 ~ 29105025 (+) True G593307
TU676335 lncRNA downstream 16495 29115906 ~ 29116723 (+) True G593317
TU676345 lncRNA downstream 33586 29132997 ~ 29133869 (+) False G593322
TU676342 lncRNA downstream 33883 29133294 ~ 29133869 (+) True G593322
TU676346 lncRNA downstream 34952 29134363 ~ 29134915 (+) True G593323
XM_021609021.2 mRNA upstream 52505 29026331 ~ 29034606 (+) False LOC110527620
XM_036984418.1 mRNA upstream 73860 29010978 ~ 29013251 (+) True LOC110527630
XR_005052564.1 mRNA upstream 94874 28987346 ~ 28992237 (+) True LOC118965280
XM_036983136.1 mRNA upstream 109498 28975483 ~ 28977613 (+) True LOC118965279
XM_021609024.2 mRNA upstream 165714 28912640 ~ 28921397 (+) True LOC110527622
XM_036983121.1 mRNA downstream 230173 29329584 ~ 29336284 (+) False LOC110527619
XR_005052561.1 mRNA downstream 230180 29329591 ~ 29364362 (+) False LOC110527619
XM_036983124.1 mRNA downstream 230182 29329593 ~ 29503787 (+) False LOC110527619
XM_036983125.1 mRNA downstream 260264 29359675 ~ 29364362 (+) False LOC110527619
XR_005052568.1 mRNA downstream 290206 29389617 ~ 29396184 (+) True LOC118965283
TU676297 other upstream 22519 29059698 ~ 29064592 (+) True G593283
TU676166 other upstream 194686 28892163 ~ 28892425 (+) True G593171
TU676138 other upstream 246028 28835209 ~ 28841083 (+) True G593144
TU675449 other upstream 1212690 27854006 ~ 27874421 (+) True plekha3
TU675374 other upstream 1379817 27703583 ~ 27707294 (+) True G592445
TU676195 other downstream 230261 29329672 ~ 29363351 (+) True LOC110527619
TU676564 other downstream 428616 29528027 ~ 29528910 (+) True G593513
TU676845 other downstream 932548 30031959 ~ 30032621 (+) True G593774
TU679426 other downstream 1803768 30903179 ~ 30903887 (+) True G596168
TU679558 other downstream 1982310 31081721 ~ 31082290 (+) True G596297

Expression Profile