RNA id: XM_036983127.1


Basic Information

Item Value
RNA id XM_036983127.1
length 1040
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110527153
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29118893 ~ 29133938 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGCTGttggtgtgacgtataatctagtggacggaacgcttctttcAACAGCAGTAACAGTTACTCAGCCACCTCGGTAGCTTTCTAGACAAAATCGCCAAACCAATAAAGCGCTTTAGACGCTTTATAGTATATTAGCCACTGTGTTTTAAACCCACTTCTGTCGTGTAACGTAGTTAGTTATCCGTTTTAATGTAATATTTACGGTGTTGTTATTAGTCAGCTAGTgggctggttaagttagcattagcatagctagctaacatccccaaCCATGAGTTCACTAAGCCATTCTCCTCCTGCTGAAGAAGAGAAGGTGTGCTGGACGGAGAAACAGGGTCTGTGGCTGAACGTTGttgtgaaagaggaagaggaggatgtcacaatacaaaaacaagtagagggtgaggctgttacagtgaaagaagagaaagacgtttcagtgaaagaagaggaagacgtgTTCAGagtaaaagaggaggaggatgttacagtgaaagaagaggaagaggcaTGTTtcggagtgaaagaggaggatggggagattactgtcacattgaaagaagaagaggatgaaactggatatctgggcccggtttcccaaaggCATGTTATGGCATCCAATGGTTCTAACGTTGAACGGGCCCTGGttaacactaGGTCAGTCATCTTtggtacaacatactatggggagTCGCGACTTCGGTTGAAGGATCTAAAATCCCACCTGAAAAGGCCAATGAAATCCGCGCCTGGCTGGAAGTCCCGCCCTCCACAGGTGATGAGCGTTAAGCTTGGATTAATTCCTTAAATTATTCCGCTCTTCACCTCAGTGTGAACAGGACCGATTCATGCTACTAAAACAAACAATTGGAACACAAGACTATCTTACGTTGTGCCAACTAAACTGACCCTTAGTGGTAGAGCGTGATCACCCCCTGGACTTTGTGTGGTTCTCATAGTTTCCTAATCACAATGCCCTGGCTATAGCAATGAGTAAGATGGCTATGAGTAAGATAAAATTCCATTTAAATTGGTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU677842 lncRNA downstream 7271 29118893 ~ 29121693 (-) False LOC110527153
TU677843 lncRNA downstream 7271 29118893 ~ 29121693 (-) True LOC110527153
TU677847 lncRNA downstream 12241 29115910 ~ 29116723 (-) True G594691
TU677822 lncRNA downstream 18565 29109411 ~ 29110399 (-) True G594670
TU677819 lncRNA downstream 48927 29079826 ~ 29080037 (-) True G594667
TU677858 lncRNA upstream 1123 29135061 ~ 29135372 (-) True G594702
TU677852 lncRNA upstream 2642 29136580 ~ 29136982 (-) True G594696
TU677863 lncRNA upstream 26429 29160367 ~ 29160579 (-) True G594707
TU677875 lncRNA upstream 81117 29215055 ~ 29222643 (-) True trnar-ccu-24
TU677880 lncRNA upstream 103099 29237037 ~ 29255482 (-) False trnar-ccu-29
XM_021609015.2 mRNA downstream 70722 29050903 ~ 29058242 (-) True LOC110527617
XM_036983120.1 mRNA downstream 173984 28944819 ~ 28954980 (-) False LOC110528935
XM_021610958.2 mRNA downstream 268109 28851239 ~ 28860855 (-) False LOC110528825
XM_021609010.2 mRNA downstream 317012 28789978 ~ 28811952 (-) True LOC110527612
XM_021609006.2 mRNA downstream 404708 28697080 ~ 28724256 (-) True LOC110527610
XM_021592779.2 mRNA upstream 57610 29191548 ~ 29199381 (-) True LOC110512312
trnar-ccu-9 mRNA upstream 68290 29202228 ~ 29202300 (-) True trnar-ccu-9
trnar-ccu-10 mRNA upstream 69243 29203181 ~ 29203253 (-) True trnar-ccu-10
trnar-ccu-11 mRNA upstream 70212 29204150 ~ 29204222 (-) True trnar-ccu-11
trnar-ccu-12 mRNA upstream 71444 29205382 ~ 29205454 (-) True trnar-ccu-12
TU677787 other downstream 102915 29024407 ~ 29026049 (-) True G594636
TU675224 other downstream 1645184 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 1962496 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 2543457 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 2970659 26157993 ~ 26158305 (-) True G590443
TU677925 other upstream 282917 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 434263 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 456055 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 462078 29596016 ~ 29599570 (-) True G594905
TU678079 other upstream 465693 29599631 ~ 29612736 (-) True G594906

Expression Profile