RNA id: trnar-ccu-14



Basic Information


Item Value
RNA id trnar-ccu-14
length 73
RNA type mRNA
GC content 0.56
exon number 1
gene id trnar-ccu-14
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29208605 ~ 29208677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccccagtggcctaatggataaggcactggcctcctaagccaggaattgtgggttcaagtcccatctggggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU677863 lncRNA downstream 48026 29160367 ~ 29160579 (-) True G594707
TU677852 lncRNA downstream 71623 29136580 ~ 29136982 (-) True G594696
TU677858 lncRNA downstream 73233 29135061 ~ 29135372 (-) True G594702
TU677842 lncRNA downstream 86912 29118893 ~ 29121693 (-) False LOC110527153
TU677875 lncRNA upstream 6378 29215055 ~ 29222643 (-) True trnar-ccu-24
TU677880 lncRNA upstream 28360 29237037 ~ 29255482 (-) False trnar-ccu-29
TU677881 lncRNA upstream 34249 29242926 ~ 29255482 (-) True trnar-ccu-29
TU677845 lncRNA upstream 69515 29278192 ~ 29278683 (-) True LOC110527632
TU677887 lncRNA upstream 76767 29285444 ~ 29285678 (-) True G594727
trnar-ccu-13 mRNA downstream 1160 29207373 ~ 29207445 (-) True trnar-ccu-13
trnar-ccu-12 mRNA downstream 3151 29205382 ~ 29205454 (-) True trnar-ccu-12
trnar-ccu-11 mRNA downstream 4383 29204150 ~ 29204222 (-) True trnar-ccu-11
trnar-ccu-10 mRNA downstream 5352 29203181 ~ 29203253 (-) True trnar-ccu-10
trnar-ccu-9 mRNA downstream 6305 29202228 ~ 29202300 (-) True trnar-ccu-9
trnar-ccu-15 mRNA upstream 1982 29210659 ~ 29210731 (-) True trnar-ccu-15
trnar-ccu-16 mRNA upstream 4165 29212842 ~ 29212914 (-) True trnar-ccu-16
trnar-ccu-17 mRNA upstream 6626 29215303 ~ 29215375 (-) True trnar-ccu-17
trnar-ccu-18 mRNA upstream 7860 29216537 ~ 29216609 (-) True trnar-ccu-18
trnar-ccu-19 mRNA upstream 9092 29217769 ~ 29217841 (-) True trnar-ccu-19
TU677787 other downstream 182556 29024407 ~ 29026049 (-) True G594636
TU675224 other downstream 1724825 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 2042137 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 2623098 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 3050300 26157993 ~ 26158305 (-) True G590443
TU677925 other upstream 208178 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 359524 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 381316 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 387339 29596016 ~ 29599570 (-) True G594905
TU678079 other upstream 390954 29599631 ~ 29612736 (-) True G594906