RNA id: TU677875


Basic Information

Item Value
RNA id TU677875
length 360
lncRNA type read_through
GC content 0.44
exon number 2
gene id trnar-ccu-24
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29215055 ~ 29222643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccataaccagttcgtactggttgtgaaaggtagacattgccccagtggcctaatggataaggcactggcctcctaagccaggaattgtgggttcaagtcccatctggggtggtcggaaacattgtggcccagcagaagcgtgctaggtccattacccagtggtcgatggatcgaaaacattttctgctaaccatagcatttaagtgccaaaaattttttttttttaaatgcgtagtttcattccatgtgtaagtgccattatacatttttgtttacctcttccatcagttcgtattggtcatatcgattagacactggcctcctaagccatggattgtgaggtttagtctttgctgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU677863 lncRNA downstream 54476 29160367 ~ 29160579 (-) True G594707
TU677852 lncRNA downstream 78073 29136580 ~ 29136982 (-) True G594696
TU677858 lncRNA downstream 79683 29135061 ~ 29135372 (-) True G594702
TU677842 lncRNA downstream 93362 29118893 ~ 29121693 (-) False LOC110527153
TU677843 lncRNA downstream 93362 29118893 ~ 29121693 (-) True LOC110527153
TU677880 lncRNA upstream 14394 29237037 ~ 29255482 (-) False trnar-ccu-29
TU677881 lncRNA upstream 20283 29242926 ~ 29255482 (-) True trnar-ccu-29
TU677845 lncRNA upstream 55549 29278192 ~ 29278683 (-) True LOC110527632
TU677887 lncRNA upstream 62801 29285444 ~ 29285678 (-) True G594727
TU677892 lncRNA upstream 71741 29294384 ~ 29294824 (-) True G594732
trnar-ccu-16 mRNA downstream 2141 29212842 ~ 29212914 (-) True trnar-ccu-16
trnar-ccu-15 mRNA downstream 4324 29210659 ~ 29210731 (-) True trnar-ccu-15
trnar-ccu-14 mRNA downstream 6378 29208605 ~ 29208677 (-) True trnar-ccu-14
trnar-ccu-13 mRNA downstream 7610 29207373 ~ 29207445 (-) True trnar-ccu-13
trnar-ccu-12 mRNA downstream 9601 29205382 ~ 29205454 (-) True trnar-ccu-12
trnar-ccu-25 mRNA upstream 843 29223486 ~ 29223558 (-) True trnar-ccu-25
trnar-ccu-26 mRNA upstream 1797 29224440 ~ 29224512 (-) True trnar-ccu-26
trnar-ccu-27 mRNA upstream 3029 29225672 ~ 29225744 (-) True trnar-ccu-27
trnar-ccu-28 mRNA upstream 9711 29232354 ~ 29232426 (-) True trnar-ccu-28
trnar-ccu-29 mRNA upstream 14487 29237130 ~ 29237202 (-) False trnar-ccu-29
TU677787 other downstream 189006 29024407 ~ 29026049 (-) True G594636
TU675224 other downstream 1731275 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 2048587 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 2629548 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 3056750 26157993 ~ 26158305 (-) True G590443
TU677925 other upstream 194212 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 345558 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 367350 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 373373 29596016 ~ 29599570 (-) True G594905
TU678079 other upstream 376988 29599631 ~ 29612736 (-) True G594906

Expression Profile