RNA id: TU677881


Basic Information

Item Value
RNA id TU677881
length 272
lncRNA type read_through
GC content 0.40
exon number 2
gene id trnar-ccu-29
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29237037 ~ 29255482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacactggcctcctaagccatggattgtgaggtttagtctttgctgaagtggctgaaagcagagttgtgcagcggatgcatgctgggcccataacccagaggttgatggatcgaaaacattttctgctaaccagctttttatagcatttaagtgcgaacaaatattttttaaaaatgcgtagtttcattccatgtgtaagtgccattatacatttttttttacctcttccatcagttcgtattggtcatattgattacaaagatccccagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU677875 lncRNA downstream 20283 29215055 ~ 29222643 (-) True trnar-ccu-24
TU677863 lncRNA downstream 82347 29160367 ~ 29160579 (-) True G594707
TU677852 lncRNA downstream 105944 29136580 ~ 29136982 (-) True G594696
TU677858 lncRNA downstream 107554 29135061 ~ 29135372 (-) True G594702
TU677843 lncRNA downstream 121233 29118893 ~ 29121693 (-) True LOC110527153
TU677845 lncRNA upstream 22710 29278192 ~ 29278683 (-) True LOC110527632
TU677887 lncRNA upstream 29962 29285444 ~ 29285678 (-) True G594727
TU677892 lncRNA upstream 38902 29294384 ~ 29294824 (-) True G594732
TU677893 lncRNA upstream 39540 29295022 ~ 29295455 (-) True G594733
TU677895 lncRNA upstream 41360 29296842 ~ 29297324 (-) True G594735
trnar-ccu-31 mRNA downstream 412 29242442 ~ 29242514 (-) True trnar-ccu-31
trnar-ccu-30 mRNA downstream 1922 29240932 ~ 29241004 (-) True trnar-ccu-30
trnar-ccu-29 mRNA downstream 5724 29237130 ~ 29237202 (-) False trnar-ccu-29
trnar-ccu-28 mRNA downstream 10500 29232354 ~ 29232426 (-) True trnar-ccu-28
trnar-ccu-27 mRNA downstream 17182 29225672 ~ 29225744 (-) True trnar-ccu-27
trnar-ccu-37 mRNA upstream 199 29255681 ~ 29255753 (-) True trnar-ccu-37
trnar-ccu-38 mRNA upstream 1988 29257470 ~ 29257542 (-) True trnar-ccu-38
trnar-ccu-39 mRNA upstream 3221 29258703 ~ 29258775 (-) True trnar-ccu-39
trnar-ccu-40 mRNA upstream 6680 29262162 ~ 29262234 (-) True trnar-ccu-40
trnar-ccu-41 mRNA upstream 9861 29265343 ~ 29265415 (-) True trnar-ccu-41
TU677787 other downstream 216877 29024407 ~ 29026049 (-) True G594636
TU675224 other downstream 1759146 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 2076458 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 2657419 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 3084621 26157993 ~ 26158305 (-) True G590443
TU677925 other upstream 161373 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 312719 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 334511 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 340534 29596016 ~ 29599570 (-) True G594905
TU678079 other upstream 344149 29599631 ~ 29612736 (-) True G594906

Expression Profile