RNA id: trnar-ccu-42


Basic Information

Item Value
RNA id trnar-ccu-42
length 73
RNA type mRNA
GC content 0.58
exon number 1
gene id trnar-ccu-42
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29266853 ~ 29266925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccccagtggcctaatggataaggcactggcctcctaagccaggaattgtgggttcaagtcccatctggggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU677880 lncRNA downstream 11371 29237037 ~ 29255482 (-) False trnar-ccu-29
TU677881 lncRNA downstream 11371 29242926 ~ 29255482 (-) True trnar-ccu-29
TU677875 lncRNA downstream 44210 29215055 ~ 29222643 (-) True trnar-ccu-24
TU677863 lncRNA downstream 106274 29160367 ~ 29160579 (-) True G594707
TU677852 lncRNA downstream 129871 29136580 ~ 29136982 (-) True G594696
TU677845 lncRNA upstream 11267 29278192 ~ 29278683 (-) True LOC110527632
TU677887 lncRNA upstream 18519 29285444 ~ 29285678 (-) True G594727
TU677892 lncRNA upstream 27459 29294384 ~ 29294824 (-) True G594732
TU677893 lncRNA upstream 28097 29295022 ~ 29295455 (-) True G594733
TU677895 lncRNA upstream 29917 29296842 ~ 29297324 (-) True G594735
trnar-ccu-41 mRNA downstream 1438 29265343 ~ 29265415 (-) True trnar-ccu-41
trnar-ccu-40 mRNA downstream 4619 29262162 ~ 29262234 (-) True trnar-ccu-40
trnar-ccu-39 mRNA downstream 8078 29258703 ~ 29258775 (-) True trnar-ccu-39
trnar-ccu-38 mRNA downstream 9311 29257470 ~ 29257542 (-) True trnar-ccu-38
trnar-ccu-37 mRNA downstream 11100 29255681 ~ 29255753 (-) True trnar-ccu-37
trnar-ccu-43 mRNA upstream 3923 29270848 ~ 29270920 (-) True trnar-ccu-43
trnar-ccu-44 mRNA upstream 5434 29272359 ~ 29272431 (-) True trnar-ccu-44
trnar-ccu-45 mRNA upstream 8315 29275240 ~ 29275312 (-) True trnar-ccu-45
XM_021609036.2 mRNA upstream 11188 29278113 ~ 29282861 (-) False LOC110527632
XR_005052565.1 mRNA upstream 135632 29402557 ~ 29413825 (-) True LOC118965281
TU677787 other downstream 240804 29024407 ~ 29026049 (-) True G594636
TU675224 other downstream 1783073 27482957 ~ 27483780 (-) True G592298
TU674725 other downstream 2100385 27166175 ~ 27166468 (-) True G591808
TU674230 other downstream 2681346 26578169 ~ 26585507 (-) True LOC110527590
TU673308 other downstream 3108548 26157993 ~ 26158305 (-) True G590443
TU677925 other upstream 149930 29416855 ~ 29495130 (-) False G594762
TU678069 other upstream 301276 29568201 ~ 29593462 (-) True G594900
TU678077 other upstream 323068 29589993 ~ 29625899 (-) False G594905
TU678078 other upstream 329091 29596016 ~ 29599570 (-) True G594905
TU678079 other upstream 332706 29599631 ~ 29612736 (-) True G594906