RNA id: TCONS_00036362


Basic Information

Item Value
RNA id TCONS_00036362
length 335
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_017082
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2213689 ~ 2214421 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGGTGTAAATAGATGAAACTGGTCTCAggtggtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctcctcaTAGCACATCTGTGCCTCATGTTCAGACACTGGGACATTTCTCCTCAAAACATCTTTCGCTCTAATCTGAACACATCTGCTTTCAATCTGAAAaggaaagtcATATTTTCCATATACCCGTCACAAAACAGGGGGAAGCGCTTTTCTTTTGTCAACTGCAGTCATTTACCAAGGCTAACACACACGAGGGGAGACAATAGAagtgtttaaatatttacaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036361 lncRNA upstream 51322 2161082 ~ 2162367 (+) True XLOC_017081
TCONS_00036360 lncRNA upstream 488641 1663759 ~ 1725048 (+) True XLOC_017074
TCONS_00036538 lncRNA upstream 858006 1354663 ~ 1355683 (+) True XLOC_017070
TCONS_00036537 lncRNA upstream 1009815 1200292 ~ 1203874 (+) False XLOC_017065
TCONS_00036536 lncRNA upstream 1009887 1200292 ~ 1203802 (+) False XLOC_017065
TCONS_00034099 lncRNA downstream 47512 2261933 ~ 2266612 (+) True XLOC_017084
TCONS_00036539 lncRNA downstream 67203 2281624 ~ 2284813 (+) False XLOC_017085
TCONS_00034100 lncRNA downstream 67414 2281835 ~ 2284813 (+) True XLOC_017085
TCONS_00036540 lncRNA downstream 266489 2480910 ~ 2481815 (+) True XLOC_017087
TCONS_00036363 lncRNA downstream 292479 2506900 ~ 2508095 (+) True XLOC_017088
TCONS_00034096 mRNA upstream 7379 2139436 ~ 2206310 (+) False XLOC_017081
TCONS_00034095 mRNA upstream 36215 2134816 ~ 2177474 (+) False XLOC_017081
TCONS_00034094 mRNA upstream 67143 2099243 ~ 2146546 (+) True XLOC_017080
TCONS_00034093 mRNA upstream 159142 2039518 ~ 2054547 (+) True XLOC_017079
TCONS_00034092 mRNA upstream 178569 1996202 ~ 2035120 (+) True XLOC_017078
TCONS_00034097 mRNA downstream 13439 2227860 ~ 2241954 (+) False XLOC_017083
TCONS_00034098 mRNA downstream 25857 2240278 ~ 2241863 (+) True XLOC_017083
TCONS_00034101 mRNA downstream 246443 2460864 ~ 2479450 (+) True XLOC_017086
TCONS_00034103 mRNA downstream 374993 2589414 ~ 2609270 (+) True XLOC_017089
TCONS_00034104 mRNA downstream 428434 2642855 ~ 2647566 (+) True XLOC_017090
TCONS_00034086 other upstream 821034 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034041 other upstream 1895584 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034116 other downstream 694130 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 2860503 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 2892147 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 3209541 5423962 ~ 5424096 (+) True XLOC_017119
TCONS_00034155 other downstream 3459609 5674030 ~ 5697001 (+) True XLOC_017120