RNA id: XM_036983132.1


Basic Information

Item Value
RNA id XM_036983132.1
length 2624
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC118965277
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29794697 ~ 29804454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacggaacgcttctttcaacagcagcaacagttcGTCAGCCAgctcggtagcttgctagacaaaaTAGACGAACCAATGAAGCTCTTTAGACGCTTTAGTGTATATTAGCCACTGTGTTTTAAACCCACTTCTGTCGTCTAGTTAGTTATCCGATGTAATTGCACTGTGTTGTTATTAGTCAGCTAGcgggctggttaagttagcattagcctagctgGCTAACATCTCCAACCATGAGGTTACTAAGCTACCCTCCTTCTAAAGAGGAGGAAgatatcacagtaaaacaagaagtagaggttgaggctgttactgtgaaagaagaggaagaggcgttcagagtgaaagaggaggaggatgttacagtaaaaggagaggaggaagagaaagagggtctgtggctgaacattgtcgtgaaagaggaggagggagagaaggatgttacaatacaaaaacaagtagagggtgaggctgttacagtaaaagaagaagagaaagacgtttcagtgaaagaagagggagacgcgttcagagtgaaagaggaggatgttacagtaaaaggaGAGGATGAAGCAGTTTAtggagtgaaggaggagggggagatgactgttacatcggaagaggaggaggaaactggatatctgggcccAGTTTTCCAAACACATCTTAAGGCATCCAACAACGAATTTACCCATAAGATGGTTTTGAGAAACCGTTCCCTGATCaacactagagagagacgggactattgtggatcctctggggagcctcaacaacttAATGATGCTgatgaggcagagaagagtctctccagatcagaacacatCAAGAAACACCTGCAGAGATCCACAGGGAAGAgaactcactgctgctctgactgtgggaagagattcacctcatcaggcattaaaattcatcagaggatccacactggagagaaaccttatagctgtggtcaatgtgggaagagatttactACATCTGGTTctctgactctacaccagagaatacacacaggagagaaaccttatatctgtggtcaatgtgggaagagttttacctCATCTAGCAGTTTGACtcaacaccagagaatacacacaggagataaaCCTTATCGATGTGtacaatgtgggaagagttttactgaGTCTGGTGGTctgactatacaccagagaacacacacaggagagaaaccttataggtgtgatcaatgtgggaagagttttggtcaaTCTGGCCATctgacagtgcaccagagaatacacacaggagataaCTCCTATAACTGTGATCAATGTGGTAAGAGTTTTATTACATCTAGCAatctgactctacaccagagaacacacacaggagagaaatctcatagctgtgatcaatgtgacaagagatactctgataaaagacatctgatcaaacatcagaaaatacatatgaaacaactccttcatgtatCATTGAACTATCCCACTTagcaaaatgtaattgaaaatatGTTGTAAATAAGGCTAATTGTCTTTATTCCACTACCGAAGAAGCATGATTCAAATCACCTACTCATATTTCAAACATCCAGCCTGACAAAATATACATGTTTAATTATTCCATGCCTCACCACAAAGTTAATTATTGCCAATATATATTAACAAAGGAGTGTGTTTGGTTTTgattattcatatttacaattcATGTAACATTTATGAATCATAATTATTTATGCAATCAACTGACATGTTTTGGCTACAATTATATTGACATTGTTGCTCTGCTTTTAAAATATCAGAGTTATGTACCAGAGCATGACATTGGGGACCTGATCCAACAGCATGCCTATTgagtgaaccctgaaaagagagagaagctctGCAGTGAGGTGGAAAGTTACTACGGATATTAAGGAGctagttctagaagctagtgagttttaggaagacgagagttctagaagctagtgagttttaggaagacgagagttctagaagttagtgagttttaggaagacgagagttctagaagctagtgagttttaggattCTATAGAAAGAAAATTTAGAAAAATAATATGattgtatattattatttagAGATACgtgttttttcttgtttttaattgttgccagccagtagacaccatgtttatattggtgaaggtgaagcattgtagttgattataatgtgaaattgaagttgttttctgttggtggtaAGCAAACCTGTCTATCAAAAATATTGAATATATGTGTTGTCTTAAAGGGGAAGGTTTTACACACTTTGGTTTTTAGGTTGGATTTTAGCACGTATAGCTCGTCAGCACGTATAGCTCCCGTTTACGTTCAGCATGTAGGacgcactgattggtgtcacctcgttagtcactgtgttacacctgtgctggcttgtccatctcgttatgGTTGAATATTGCCTCATGTTGTTAATATTTTAATCAGAGGATTTTCCTTAGTCTTTCAGTTGTTAATCTTCTGTTTTTTATCATCTTATATGTGTTGTGTATTAAATATGtctgtttatttttgtaaattcatgtgaagccattgtgttgcatccatgtctgaaatgtgctgtataaataaagcttgatatAATTTGAACGTATTGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU676656 lncRNA upstream 79670 29714713 ~ 29715027 (+) True G593597
TU676590 lncRNA upstream 157934 29563350 ~ 29636763 (+) False LOC110527623
TU676591 lncRNA upstream 177624 29564179 ~ 29617073 (+) True LOC110527623
TU676542 lncRNA upstream 255028 29487795 ~ 29539669 (+) True G593493
TU676563 lncRNA upstream 265787 29528027 ~ 29528910 (+) False G593513
TU676726 lncRNA downstream 33986 29838440 ~ 29839079 (+) True G593662
TU676760 lncRNA downstream 104383 29908837 ~ 29909102 (+) True G593695
TU676773 lncRNA downstream 116968 29921422 ~ 29970210 (+) True G593708
TU676782 lncRNA downstream 126424 29930878 ~ 29974579 (+) True G593716
TU676817 lncRNA downstream 169173 29973627 ~ 30124102 (+) True G593747
LOC110527616 mRNA upstream 91641 29686416 ~ 29703056 (+) True LOC110527616
XM_021609025.2 mRNA upstream 157928 29563809 ~ 29636769 (+) False LOC110527623
XM_021609027.2 mRNA upstream 290910 29495708 ~ 29503787 (+) False LOC110527619
XR_005052566.1 mRNA upstream 352027 29413870 ~ 29442670 (+) True LOC118965282
XR_005052567.1 mRNA upstream 378246 29413870 ~ 29416451 (+) False LOC118965282
trnak-uuu-3 mRNA downstream 86425 29890879 ~ 29890951 (+) True trnak-uuu-3
XM_036984420.1 mRNA downstream 127371 29931825 ~ 29944679 (+) True LOC110528937
XM_021609016.2 mRNA downstream 170512 29974966 ~ 29983540 (+) True LOC110527618
XM_021609028.2 mRNA downstream 205214 30009668 ~ 30016052 (+) True LOC110527626
XM_021609045.2 mRNA downstream 373943 30178397 ~ 30184539 (+) False LOC110527639
TU676564 other upstream 265787 29528027 ~ 29528910 (+) True G593513
TU676195 other upstream 431346 29329672 ~ 29363351 (+) True LOC110527619
TU676297 other upstream 730105 29059698 ~ 29064592 (+) True G593283
TU676166 other upstream 902272 28892163 ~ 28892425 (+) True G593171
TU676138 other upstream 953614 28835209 ~ 28841083 (+) True G593144
TU676845 other downstream 227505 30031959 ~ 30032621 (+) True G593774
TU679426 other downstream 1098725 30903179 ~ 30903887 (+) True G596168
TU679558 other downstream 1277267 31081721 ~ 31082290 (+) True G596297
TU680885 other downstream 2204860 32009314 ~ 32009930 (+) True LOC110531742
TU682386 other downstream 3431359 33235813 ~ 33236636 (+) True G599004

Expression Profile