RNA id: trnaw-cca-2


Basic Information

Item Value
RNA id trnaw-cca-2
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-2
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29890649 ~ 29890720 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCTCGTGGCGCAAAGGTAGCGCATCTGACTCCATATCAGAAGGTTCTGTGTTCAAATCACATCGTGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU678155 lncRNA downstream 46483 29743409 ~ 29844166 (-) True G594977
TU678181 lncRNA downstream 70825 29802575 ~ 29819824 (-) True G595001
TU678178 lncRNA downstream 86255 29794738 ~ 29804394 (-) True G595000
TU678126 lncRNA downstream 189383 29700058 ~ 29701266 (-) True G594952
TU678108 lncRNA downstream 216700 29669112 ~ 29673949 (-) True G594934
TU678269 lncRNA upstream 38820 29929540 ~ 29930735 (-) True G595083
TU678229 lncRNA upstream 40992 29931712 ~ 29932289 (-) True G595045
TU678214 lncRNA upstream 51123 29941843 ~ 29944311 (-) True G595033
TU678310 lncRNA upstream 90285 29981005 ~ 29981778 (-) True G595119
TU678412 lncRNA upstream 266714 30157434 ~ 30162472 (-) False G595216
XM_021609043.2 mRNA downstream 52040 29833722 ~ 29838609 (-) True LOC110527637
XM_036983131.1 mRNA downstream 157094 29728776 ~ 29733555 (-) True LOC118965276
XM_036983130.1 mRNA downstream 350955 29537604 ~ 29539694 (-) True LOC110527615
XM_036983128.1 mRNA downstream 350957 29525727 ~ 29539692 (-) False LOC110527615
XR_005052563.1 mRNA downstream 395371 29488550 ~ 29495278 (-) True LOC110527636
LOC118965350 mRNA upstream 135983 30026703 ~ 30028202 (-) True LOC118965350
XM_036983138.1 mRNA upstream 223914 30114634 ~ 30119849 (-) True LOC110527614
XM_021609026.2 mRNA upstream 231255 30121975 ~ 30126819 (-) True LOC110527624
XM_021609049.2 mRNA upstream 422659 30313379 ~ 30327412 (-) False LOC110527641
XM_021609046.2 mRNA upstream 422659 30313379 ~ 30394790 (-) False LOC110527641
TU678203 other downstream 61084 29827953 ~ 29829565 (-) True G595022
TU678146 other downstream 163159 29721676 ~ 29727490 (-) True G594968
TU678145 other downstream 163399 29721676 ~ 29727250 (-) False G594968
TU678079 other downstream 277913 29599631 ~ 29612736 (-) True G594906
TU678078 other downstream 291079 29596016 ~ 29599570 (-) True G594905
TU678577 other upstream 419451 30310171 ~ 30310934 (-) True G595364
TU679152 other upstream 713455 30604175 ~ 30611268 (-) True LOC110527646
TU679349 other upstream 953461 30844181 ~ 30844624 (-) True G596094
TU679294 other upstream 972137 30862857 ~ 30863320 (-) True G596039
TU679613 other upstream 1045445 30936165 ~ 30936614 (-) True G596352