RNA id: TU678685


Basic Information

Item Value
RNA id TU678685
length 545
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id LOC110527641
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30311282 ~ 30394791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caagtaatttgaCCGTTATTCAAGTCTGGttcctccttgggagcaatttataaatgcctgaagataccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaacacgcagccaggaaggagacgtgttctgtctcctagagatgaacgtactttggtgtgaaaaatgcaaatcaatcccagaacaacatcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagcactatatcgacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccaccataaacaagccagactacggtttgcaactgcacatggggacaaagatcgtactttttggagaaatgtcctcaggtctgatgaaacaaaaaatagaactgtttcgccataatgaccaccgttatgtttggaggaaaaagggggagacttgcaagctgaagaacaccaagctgtttaaaggcacagtcatcttagtgtatgtaagcttctcaccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU678576 lncRNA downstream 7013 30303328 ~ 30304434 (-) True G595363
TU678602 lncRNA downstream 9829 30301398 ~ 30301618 (-) True G595389
TU678601 lncRNA downstream 10466 30300753 ~ 30300981 (-) True G595388
TU678599 lncRNA downstream 13456 30295800 ~ 30297991 (-) True G595386
TU678598 lncRNA downstream 16995 30294253 ~ 30294452 (-) True G595385
TU678682 lncRNA upstream 218 30312209 ~ 30312716 (-) False LOC110527641
TU678679 lncRNA upstream 375 30312366 ~ 30314661 (-) False LOC110527641
TU678681 lncRNA upstream 2510 30314501 ~ 30315739 (-) True LOC110527641
TU678689 lncRNA upstream 10581 30322572 ~ 30322851 (-) True G595468
TU678692 lncRNA upstream 16792 30328783 ~ 30329035 (-) True G595471
XM_021609026.2 mRNA downstream 184628 30121975 ~ 30126819 (-) True LOC110527624
XM_036983138.1 mRNA downstream 191598 30114634 ~ 30119849 (-) True LOC110527614
LOC118965350 mRNA downstream 283245 30026703 ~ 30028202 (-) True LOC118965350
trnaw-cca-2 mRNA downstream 420727 29890649 ~ 29890720 (-) True trnaw-cca-2
XM_021609043.2 mRNA downstream 472838 29833722 ~ 29838609 (-) True LOC110527637
XM_021609049.2 mRNA upstream 1388 30313379 ~ 30327412 (-) False LOC110527641
XM_021609046.2 mRNA upstream 1388 30313379 ~ 30394790 (-) False LOC110527641
XM_021609047.2 mRNA upstream 1388 30313379 ~ 30394791 (-) False LOC110527641
XM_021609054.2 mRNA upstream 273512 30585503 ~ 30593851 (-) True LOC110527645
XM_021609055.2 mRNA upstream 292106 30604097 ~ 30611219 (-) False LOC110527646
TU678577 other downstream 513 30310171 ~ 30310934 (-) True G595364
TU678203 other downstream 481882 29827953 ~ 29829565 (-) True G595022
TU678146 other downstream 583957 29721676 ~ 29727490 (-) True G594968
TU678145 other downstream 584197 29721676 ~ 29727250 (-) False G594968
TU678079 other downstream 698711 29599631 ~ 29612736 (-) True G594906
TU679152 other upstream 292184 30604175 ~ 30611268 (-) True LOC110527646
TU679349 other upstream 532190 30844181 ~ 30844624 (-) True G596094
TU679294 other upstream 550866 30862857 ~ 30863320 (-) True G596039
TU679613 other upstream 624174 30936165 ~ 30936614 (-) True G596352
TU679696 other upstream 766521 31078512 ~ 31079318 (-) True G596433

Expression Profile