RNA id: XM_021609054.2


Basic Information

Item Value
RNA id XM_021609054.2
length 2354
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110527645
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30585503 ~ 30593851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtttccgtgtgagtgtttgggccacacagTACTGTTTCGGCTTTGTAAATTCACGTCATCgttttgattcagtgttcagtgctttctttaattaaaatcatcatgaacacttaccacttactttggtcctcctctctttctcccgaagACGATCGTTACAACAAGCAAGAGTATGAAAGAGTGGCAGGAGTAAAATGAAAGCAATAAATTCAGCAAGATTAAAGTGACAAGTGGATTTTGCACCCCTcaaaacacaggaaatagatggcAAAAAAAGAAGATCCTCAGATGGTGTTAATAAAGCACTCCGTACCAGTGATAGTGGTCCAAAGCCACTGCTCCTGTGTTGCAGGAAGTGCTCTGTGCAATCATCTGGTGGCCCTTCTTTACCAGACAGTGCACTACTCTCAACTAAACATTCCTGTTGCACCACCAGTGGATACATGCCTGATATGGACCTTCCCTGCATCTCAGAAACGTATGCCAACTTTTCTCCACTTTACTGCCCCTCTTCTGACATATCCATTGTCACCTGATGTGCCCCTGGTTGAGTCCACCTTTGGGCCAGTGCAATGCGGCAGTGTTCTGTCCTATCAACTTCCACAGCCAAAGACCTGTGAAATTGTAAAGATTGCCGATGCCCCTTTTCCACCAATACTTCCATTAGATGGCTACAGGCTTCAGGCTTCCCAGTGTGCTTACGTCCTTAGCCATCAGGAGCAGTTCCACCTCAATGCATTAGAGACAACCTACAAGATATCACACAAAGTCAAGGTTGAACATCAGCTCAGGAAAATGAGAATAACATCCTCTCTTTTCCGAAAGGTTTGCCATGTCCTGGGAGAGACCTCAGCTGACCACCTAGCTGAGCGGATGTTCAAGGGATCTGGTATACAGACCATGGAGATGAAGAGGAGGCTAGCCATGGAGCCAGTGGCTGTACAGGAGTACTGCACACTGAAGATTGTTAACTTCTTTCCGTGTGGCTTCGTAGTGCACCAAGATGCTCCATGGTTAGGATCCTCTCCAGATGGCATCATATTTGATTCCAGTGTTAGACCACACGTTTAGGCTCTTAGAGGTGAAGTGCCCAATTGTACCAAGTTATGTCGACTGCTCTTACCTGAAGATACAGAATGGAGAGCTGATGTCCTTACCTGAAGATACAGAATGGAGAGCTGAAGTTGAAGAGATCTCATGCTTACTACTGGCAGGTGCAAGGTGAAATCCTTCTCACAGGTTGTAGCTGATGTGACTTTGTCAGCTGTGCACAGGAGGACATCCTAGTCTACAGGTTTCAAAAACTATAAGAGAGAAGGTTGACCACTTTTATTTTTTACCAGTACTTGCAGAAGTGTCTCTCGCACCTGACTGGATCCCCTGCATGGGTGGCAAGTTTAGTGGTTTTATGAAAAATAAGTATTGATGTTCTTGTGAAGAAATCTACAGTAGaatagatttgtttaaaaaaatgtatttcagcaAATGTTCAACAGTTCAGTTAATCAATTACACATCTAACATTGTATTCAATCTTGCATTCTGGTTATTCTGTGTTTCCCCCACCCCTGTCACTCATTGCCTAATTAAAGCCAATACAAGCTCcacacaaactgatattcactacAACACAAATGATTGATACATGTTGTAGATAAACATATTATTTTGCTGCTAGCAAATAAACAGATGTACATTTACACTGGCTTGACCCATGCTCTGGACCGGATCAGAGACGACACAGTCCACAGGCAGTGCACCTTGTTCTTCATCCCCCTCAGTCGGAGCAGGAGGTTTCAGTCTTCTTTCCCGAACACCAGGTCTCTTTTGAATTTGCCAGTTCCACACGAATACAGTAGGAACAACATCTCTTTTTAGCTATTGTCTTACACCAGTCTCACAATTCAATAAAGTATAAAAGCCAACAGTTCAATATTCTAACACTGCTATGCGGACGTGGACACATTGGACCCTGAAAGCCACTTTAGAGTGACAAAACCATGTGGAAACTGGGTTGCAAAGATCAAAGTTAGGCCAGTGGCCCTCATGATAGAGGACTGAGCAGCTCAGAGTAGTGTAATGAGCTGGGCTGTAAACATTGACCAGACCCAGACAGTACAAGTCATAAAAATGAGGAGCCAAAACACATCAATGGGAGGGAGTGACACTTGGGTACCACAGGCAGCAGCTGTTTCCCATTCACAGGAAGAAGAAAACATTCTTAAATGCAATTCTACTAATTTTGCAATAGGGCACAGAGAAACTGTTGCAATTTTATAAAACAGAAGGCCATCCTCATTTTGCAATGGGGCagattgcagttttaaagcaagttttttgcagttctacacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU679134 lncRNA downstream 4472 30580817 ~ 30581031 (-) True G595888
TU679133 lncRNA downstream 5584 30579708 ~ 30579919 (-) True G595887
TU679095 lncRNA downstream 6633 30576117 ~ 30578870 (-) True G595853
TU679125 lncRNA downstream 42488 30542797 ~ 30543015 (-) True G595879
TU679121 lncRNA downstream 45912 30538866 ~ 30539591 (-) True G595876
TU679145 lncRNA upstream 1202 30595053 ~ 30596158 (-) True G595899
TU679164 lncRNA upstream 29633 30623484 ~ 30626714 (-) True G595915
TU679168 lncRNA upstream 39523 30633374 ~ 30633891 (-) True G595918
TU679167 lncRNA upstream 40649 30634500 ~ 30636019 (-) True G595917
TU679361 lncRNA upstream 269799 30863650 ~ 30863858 (-) True G596105
XM_021609047.2 mRNA downstream 190712 30313379 ~ 30394791 (-) False LOC110527641
XM_021609046.2 mRNA downstream 190713 30313379 ~ 30394790 (-) False LOC110527641
XM_021609049.2 mRNA downstream 258091 30313379 ~ 30327412 (-) False LOC110527641
XM_021609026.2 mRNA downstream 458684 30121975 ~ 30126819 (-) True LOC110527624
XM_036983138.1 mRNA downstream 465654 30114634 ~ 30119849 (-) True LOC110527614
XM_021609055.2 mRNA upstream 10246 30604097 ~ 30611219 (-) False LOC110527646
XM_036984423.1 mRNA upstream 55138 30648989 ~ 30686105 (-) True LOC110528941
LOC118965351 mRNA upstream 304076 30897927 ~ 30912147 (-) False LOC118965351
XM_021609062.2 mRNA upstream 355626 30949477 ~ 30953659 (-) True LOC110527649
XM_021609063.2 mRNA upstream 396008 30989859 ~ 31005163 (-) False LOC110527650
TU678577 other downstream 274569 30310171 ~ 30310934 (-) True G595364
TU678203 other downstream 755938 29827953 ~ 29829565 (-) True G595022
TU678146 other downstream 858013 29721676 ~ 29727490 (-) True G594968
TU678145 other downstream 858253 29721676 ~ 29727250 (-) False G594968
TU678079 other downstream 972767 29599631 ~ 29612736 (-) True G594906
TU679152 other upstream 10324 30604175 ~ 30611268 (-) True LOC110527646
TU679349 other upstream 250330 30844181 ~ 30844624 (-) True G596094
TU679294 other upstream 269006 30862857 ~ 30863320 (-) True G596039
TU679613 other upstream 342314 30936165 ~ 30936614 (-) True G596352
TU679696 other upstream 484661 31078512 ~ 31079318 (-) True G596433

Expression Profile