RNA id: XM_021609060.2


Basic Information

Item Value
RNA id XM_021609060.2
length 4031
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110527647
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30733583 ~ 30854816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAATATCATAGACCCCAACATTTTCCTACCTTTGCAGTTCATACGATGTCTGAAACTCTGCATTGcggttaattttttattttatttctttgtAGAGAGATGAATGGCCTCATTGTGATGTTTTAATCACATTAGCGTTTACATTGAATTAAAATAGCCATGTTCTTGTGATGCTTGTAAATCCGAATCTTACTTGCTCCACCCAAGTACCAGGCGGATCTTGGGAAATATGTCATTTGGAGCGCGCACGGTGGTGGTAGCAACCTTCTTATTATAGCTCAATGGCAGAAACACACATCAGCAAACTCAAAGGATACGTGGATTCTCATTGAATAATTGTATGGCTCGTGGCTGGGTGAAAGCCCATGGTGACACAAATTTACCAACAAACTGAAACCGCATAAGAGGACAGATGACTCGACACGAACATAATTATTTCATGGGACACAGAGATATGCTTATTTTTGTTTGTATTTGCTGACTACTGAATGAATCATTGATCACGGACTGCTAGTTAGCAGGTAGATATTCCGGAATTTCTGGCCAGCTGCATTGCCAAGGTCCTATAGGTATTTGGATTGGCTGTGGTTGTAACTATAGCAAACTAGGCTCGGATACAACAATCAGGTCAATTGGACGGATTTCCCATTCTAGCTACTTTCATCCATTCCATGTTTACTCGGAGGTGTATCAAATTGGCTGGCTAGTTAACGAGCTAGCTAGCCAAACACCGAGTCGGACGGGATTATAATATTCCACGTTGCTAGCTACTGTATTGTTTCCCTCCAGGAATTTGGATTTATTTTACTAGAACATTAACAGTATTTAGCTATAGATATCTTTGGGCCAATCCCTTTTGAAACTTTACACCGAGATTTCCCTCAACAGCTATATTTATAAACGAATGAATTTAAAAGCTACTATAGCTAGCTAGTGTTGTTCGATTTTGGAAAATGGATGCGGGCATTGAAAAGGAATGCAGCGCTCTGGGAGGGCTCTTCCAGATCATCATGAACGACATGAAGGCTAGTTATCCAGCCTGGGAGGACTTTGTAACCAAAGGAGTTAAGCTGCAATCCCAGCTAAGGGCAACCGTCATCGTCACAAGCTCTTTCCTGGATGCCTTTCAGAAGGTGGCAGATATGGCGACTGGAACAAGAGGGGCGACAAAAGAGATTGGCTCAGCCTTGACGAGAATGTGCATGAGGCACAGAAGCATCGAGTCCAAACTGAAGCTCTTCACCACGGCACTAACAGATACCCTGATCAACCCCCTGGAGCTGAAGATTGAGGAGTGGAAGAAGGTGGCCAGTCAGTTGGACAAGGACCATGCCAAAGAATACAAGAAGGCCAGAGCAGACATAAAGAAGAAATCCTCAGATACAATCAAGCTGCAGAAGAAGGTTAAGAAAGGAAAGGACGAGGTGCGCGGGCAGCTGGACAGCGCCCTGCAGGAGGTGAACGTGTGCTATGCTGTGCTGGAGGAGACTGAGAAGAGGGCCGTGTGCCGGGCGCTCATCGAAGAGAGGGGCCGTTACTGTGCCTTTGTCAGCATGCTCAAACCTGTGCTGGATCATGAGATTAGCATGCTGGGAGAAGTGACCCACCTGCAGACCATCCTAGAAGACCTGAGCAGCCTGACGGCCGAGCCCAGCAAACTGCCCCTCGCCAGCGAACAGGTGATCTTGGATCTGAAGGGATCTGAATACAGCTACAGTTACCAGACgccccctgcctcccccagcAACACGCTGTCCCGCAAGAGCAGCATCAGCAGtAACTACAACTCTATTAGGTACGTCCCCTCTCTGGACTCCATCGCTACCTCGGTGGACAGCATTCACCTTTGCCTGCCCTCCATGTACCCAGCACAGTATTTGTTTCAGGAGTTGAGCGGGCCGTGGTCGGGGCAGATCGGGCCGGGCACAGAGAATGGCACGGCCATGCCCCCTCCACACAACGCCTACACACAGCACCGAGAGAGAGTGCGCACCATGTCCACATCCGGAAAGCTGGCCCTGACCCTGGGCGGTGGGCTCAACTCGGAGGCCCCCCACACTAGTCGTGACTCCCTCCACTGCTCTAGTGGCTACAGCACGCAGACCACCACgccctcctgttccgaggacacCATTCCCTCCCACGACTACGACTACATCTCCCTGCATGGGGGAGAGGAGTTGCACCACAGCCCGCCCGACTTTGACAAGTCCTCCACCATCCCGCGCAACAGCGACCTCAGCCTGCAGTACCGCAAGATGTTCCAGAGCAAGCGGCCCGCCTCGACCGTCAGCCTGCTCGCTGAGCCCGAGCCGCTGGGCCTGCGCCAGATGCACACTGCCACCATCCGCCGCAAGCCCTCATCCAAGCCCACCTACCGCCGTGGCACCATCAGTGGCGGCGTACCTATCCCTATCTGCACCCCCCAGGTTCCCTTCAAAGCCTTGGGGGGAGGTGTAGGTGGAGGCAACGTTGGTGgaggggggaagagcgggagtGACGAGAACGTGGGGCCTCCAGAGAGCAGTGTGGGGAAGGGCGTGATTGGCATGAGCAGAACGGTGGACCACGAGTTGGTCCTCGCCAAGCACAGTCTGTGCACTTCCACCCAGAGCCTGAGCGCCATGCCCTCGCACCACTCATCATCCACATCGCCCTACTACTCTCTGATCCCGGGCAAGGCGCCAGTGCCCGTGGGCAGCTCAGAGCAGCTGTACCAGCTGAGCAAGCAGCAGCAGTACGCCCTgcaccagcagcagcagaagcagtACCAGCACCTACAGtacaaccagcagcagcagcagttccAGCCACCCCAGACACAACAGTTGCAACCAGCAGCCCAGACACAACAGCATTTTCAACTACAGCAACAgttccagcaacaacaacaactactacagcagcagcaacagttacAACAACAGCAGTACCAGCAGACACCACAACCGCAACAGCAGAAGCTCCAATATCAAAAGCAGCAACAGTTTCAGCAGCAGTCTCATCTCCCACAACAGTACAACGCATCTGGGACTGGCAACCAGCTGGTGGAAAGCGGCCACTGCCCTCCCCCCCAGCAGCCCCCTGCCGCCCCAGACACCCAGGACGCAGATGAGCCCTCGGGTGGTGGAGGTCACATGGTCACCATGATCCGGGGAGTGAAACTGCGTCGGACTCTGACCAACGACCGCTCTGCCCCCTTCATCCTCCTGCCCAACCAATTCAAATGAGCCCTTCCCTACCAGTGTAGGTTGTCGGACTCTGACCAACGACCGCTCTGCCCCCTTCATCCTCCTGCCCAACCAATTCAAATGAGCCCTTCCCTACCAGTGTAGGTTGTCGGACTCTGACCAACGACCGCTCTACCCCCTTCATCCTCCTGCCCAACCAATTCAAATGAGCCCTTCCCTACCAGTGTAGGTTGTCGGACTCTGACCAACGACCGCTCTGCCCCCTTCATCCTCCTGCCCAACCAATTCAAATGAGCCCTTCCCTACCAGTGTAGGTTGTCATCGTTTTGTTTTACGGTTCTTGCTTTTCTTTTAGCCCCGTTTTGATTACATTTCCCCTGAGAAAAGAAAGGATGTTTCCTTTTTGGACGTTTTGTCTTGTGTAAAAGGTTTCCCTCTCTCCAATCAAATGTCCAGTAGCACTGTGTTTTAAACAGATTGTTATAATATCCCTCAGAGGGACTCGTAGGTGAATGTGGCCTCTTTATCGCTCTGTAATTTAAGATTTTTATACATACTGTACAAGGATGCGTGTTGGCTATATACAAGAATTTGAGCGCATAAATGATAAGTCTTATGTTTCTATATTGTTGAGGGGAAAATGCCTTGCTTACTTATTAGTCTTATCACCTGTATGGTTGGAACCAATAAAAACCCACACATATGTATATATTAGCGTGTTATACGGAAAtctttattgtatttttattattatcaGTGTCAATGACAAAGACTGAAACAGTGGATGTGTAATGAATGATCCCCTAGAGGAAATTAAAGACGCATAACTAGACCTATA

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU678835 lncRNA upstream 150205 30583002 ~ 30583380 (+) True G595612
TU678826 lncRNA upstream 176065 30557287 ~ 30557520 (+) True G595603
TU678822 lncRNA upstream 181772 30551607 ~ 30551813 (+) True G595599
TU678816 lncRNA upstream 187141 30546007 ~ 30546444 (+) True G595593
TU678811 lncRNA upstream 193909 30539469 ~ 30539676 (+) True G595588
TU679383 lncRNA downstream 21104 30875920 ~ 30876207 (+) True G596127
TU679388 lncRNA downstream 23474 30878290 ~ 30878683 (+) True G596131
TU679400 lncRNA downstream 29974 30884790 ~ 30885010 (+) True G596142
TU679408 lncRNA downstream 37549 30892365 ~ 30892638 (+) True G596150
TU679415 lncRNA downstream 42707 30897523 ~ 30897775 (+) True G596157
NM_001160702.1 mRNA upstream 97577 30623484 ~ 30636008 (+) True if2b
XM_021609053.2 mRNA upstream 154715 30561586 ~ 30578870 (+) True LOC110527644
XM_021609051.2 mRNA upstream 197458 30509261 ~ 30536127 (+) False LOC110527643
XM_021609052.2 mRNA upstream 197458 30509767 ~ 30536127 (+) True LOC110527643
XM_021609050.2 mRNA upstream 234026 30461359 ~ 30499559 (+) True LOC110527642
XR_005052703.1 mRNA downstream 197810 31052626 ~ 31071618 (+) True LOC118965377
XR_005052704.1 mRNA downstream 216926 31071742 ~ 31073140 (+) True LOC118965378
XR_005052705.1 mRNA downstream 218529 31073345 ~ 31074263 (+) True LOC118965379
XM_021609068.2 mRNA downstream 349688 31204504 ~ 31716227 (+) False LOC110527653
XM_036983142.1 mRNA downstream 541474 31396290 ~ 31713376 (+) False LOC110527653
TU676845 other upstream 700964 30031959 ~ 30032621 (+) True G593774
TU676564 other upstream 1204675 29528027 ~ 29528910 (+) True G593513
TU676195 other upstream 1370234 29329672 ~ 29363351 (+) True LOC110527619
TU676297 other upstream 1668993 29059698 ~ 29064592 (+) True G593283
TU676166 other upstream 1841160 28892163 ~ 28892425 (+) True G593171
TU679426 other downstream 48363 30903179 ~ 30903887 (+) True G596168
TU679558 other downstream 226905 31081721 ~ 31082290 (+) True G596297
TU680885 other downstream 1154498 32009314 ~ 32009930 (+) True LOC110531742
TU682386 other downstream 2380997 33235813 ~ 33236636 (+) True G599004
TU682518 other downstream 2435710 33290526 ~ 33295528 (+) True G599123

Expression Profile