RNA id: LOC118965351


Basic Information

Item Value
RNA id LOC118965351
length 2647
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC118965351
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30897927 ~ 30912147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaaaatataaaatagtaaagtaaagtacaaataccctGAAAAACAAGTagcactttaaagtatttttaagtattttacaccactgagtgtaCCCTGCTTGCACAACCCATGTATTCCTAGTCTCTGGCAGCGTTTGGAACTGCTGATCTGCGGCCATGACGGAGACATGGATttccccagagaacactgctacctactccagctgctctctcgTCACCTGACTAAGTTTTTCTCTCATAGTCCCAGAGCATCTGGTCAACGTGGTGGTAAAGAtttcctcttttctccctctctcacctgttgCATCATTTGAATTCCttgctgtcactgtcacttgtccactcaaaCTTAACATTGTTGACATCTATCgcccaccaggtgcccttggaGAGTTCCTCAATAAGTTTAACACCTTGATAAACTAATTTCCTGACAATGGCTCACCACTCATTGTACTGGGCGACTTTAACCTCCCGACTCCTGActtcaataaaacattttccacCTGGTACTTTCTTTCCACTCTTTTGACCTCTTCCTTTCCCAGTCacctcccactcacaaggcaggcaatactcTTGACCTCATCTTCACTAGAGGCTGTtcacctactaatctcactgcaacccccctccatgtctctgatcactactttgtttcccTTTCTCTAGATCTCTCTTCCAAACCtacccactcagcccctacccagatggtcatgctCTGCCACAATCTTCGTTCTCTCTGCACCgctgtctcctctcctatcctctcttccttctgcTTCCTTACTACTCTCCTCCTTTCTGCATCCTTTGACTctcactgtcccctttcctcccaaGCGGTGCGATCTTCCCCTCCCGCTCCATGGCTGAGTGACTCACTGCGTGCTAACAGAACATGGCTGCGGGCAGCTGATTAgaaatggaggaaaacaaaactTCCCTGAGGACCTTTCTTCCATCcattccctcctctctaccttcgcttcctctgtatctgctgctaaagccactttctatcactctaaatttcaagcttctgcctcCAACCCTGGGAAACTCTTCTCCACTTTCTCCTCCCTcaatcctcctctccctctctgctgaaGACTTTATCAACTACTTTGAAAAAAGGCTGACGGCATCTGCACCTCTTTCACTCAGCCGACTGAGTCCACTGGTCGCACTCACACAAAACTACCCTACGCTTGGAGTTTTTTCTCCCTTATCTTTCCAGATGAAATCATGCGAATAGTGATGTCCAGCCGCCTGATAACCTGCCCACTTGACCCCATTACCTCCTTCCTTCTCCAGACCacctctggagaccttctcccattcctcatcaACTATTTCCTGACCACTGGCTTcatcccctctgacttcaagatggcctcctcaagaaaccaacactcaaaCACTCTGACGTCAAAAACTACAGACCggtatcccttctttcttttcttttctttccaaaacacttgaacaAATCTCTCGTCATCTCTCTCAGAACAATCTTCTTCACCCtgaccagtcaggcttcaaggcGGCTCACTCAACTGAGACTGTTGTCATTTGTGTCACGGTGGCTAACCTCTCTCCACAAAGCTGActctctttcctctgttctcatcctcctagatctatccgctgccttcaacaccgtgaaccatcagatctcTCCTATCAGGTGGTGTGGAGTAGATCTGTGTCTGCAGCATGTACCCTCACTACTGGTCTCCCACAGGTCTCAGTtataggccctctcctcttttctctttacACTAAGTCACTCGGCTCTATCACATCCTCatatggtctctcctatcattgctatgcagatgacattAAActactcttctccttctccctgacacccaggtggcaacACACATCTCTTCATGCCTGGCAGACATCTCAgtttggatgtcggcccaccacctcaagcccAATCTTGACAAACAGGATCTGTTCTTCCTCCTGGGAAAGGCCTGcccgctccaagacctctccatcacggttgacaactccatggTGTCCCTCTCCCAGAATGACCCTGTCGtactctgcaaacatcaaagcagtgactcactcCTGCAGGATCATGCTATACAAGATCCATAGAGTATGACTTTTCCTCACAAAGAAGCCAGCACAGGTCCTAATCATGGCATCTCCCgtctagactactgcaactctctgttggctgggctccctgcttgtgccatcaaaccccatgcaacttatccagaatgctgcagcccgcctggtgttcaaccttccatGTTCTTCCATGTCACCCCACTCCTCCACACACTGCACTGGCTTCCAAATGAAGCTCGCATCATCTTCAAGACCCTGGTGATTTCCTATGgagcagcaaggggaactgcatctccttaccttcaggctattctcaaaccctacatcccaacccgagcactccattCCACCACTTCTattctcttggccctcccacccagcccagtcaaagctcttcaCCGTCTCGCAACCAATGgctcgggagaggtgaaggaggagTTCGCCAACACCCGCCagtttaacccggaagccagccgcaccaatgtgtcggaggaaacacggtTCAAGGAGGATACCCAACCCAACCTCTATGCAGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU679413 lncRNA downstream 3219 30894447 ~ 30894708 (-) True G596155
TU679411 lncRNA downstream 3622 30894069 ~ 30894305 (-) True G596153
TU679404 lncRNA downstream 10552 30887096 ~ 30887375 (-) True G596146
TU679403 lncRNA downstream 11717 30885969 ~ 30886210 (-) True G596145
TU679371 lncRNA downstream 30317 30867394 ~ 30867610 (-) True G596115
TU679596 lncRNA upstream 11310 30923457 ~ 30923738 (-) True G596335
TU679610 lncRNA upstream 21457 30933604 ~ 30933848 (-) True G596349
TU679615 lncRNA upstream 26797 30938944 ~ 30939145 (-) True G596354
TU679617 lncRNA upstream 28932 30941079 ~ 30941381 (-) True G596356
TU679683 lncRNA upstream 164751 31076898 ~ 31081848 (-) True LOC110527652
XM_036984423.1 mRNA downstream 211822 30648989 ~ 30686105 (-) True LOC110528941
XM_021609055.2 mRNA downstream 286708 30604097 ~ 30611219 (-) False LOC110527646
XM_021609054.2 mRNA downstream 304076 30585503 ~ 30593851 (-) True LOC110527645
XM_021609047.2 mRNA downstream 503136 30313379 ~ 30394791 (-) False LOC110527641
XM_021609046.2 mRNA downstream 503137 30313379 ~ 30394790 (-) False LOC110527641
XM_021609062.2 mRNA upstream 37330 30949477 ~ 30953659 (-) True LOC110527649
XM_021609063.2 mRNA upstream 77712 30989859 ~ 31005163 (-) False LOC110527650
XM_021609064.2 mRNA upstream 79691 30991838 ~ 31005163 (-) True LOC110527650
XM_021609065.2 mRNA upstream 115171 31027318 ~ 31037871 (-) True LOC110527651
XM_021609066.2 mRNA upstream 164740 31076887 ~ 31097917 (-) False LOC110527652
TU679294 other downstream 34607 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 53303 30844181 ~ 30844624 (-) True G596094
TU679152 other downstream 286659 30604175 ~ 30611268 (-) True LOC110527646
TU678577 other downstream 586993 30310171 ~ 30310934 (-) True G595364
TU678203 other downstream 1068362 29827953 ~ 29829565 (-) True G595022
TU679613 other upstream 24018 30936165 ~ 30936614 (-) True G596352
TU679696 other upstream 166365 31078512 ~ 31079318 (-) True G596433
TU681689 other upstream 1506043 32418190 ~ 32420148 (-) True G598354
TU682450 other upstream 2325900 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 2326000 33238147 ~ 33239795 (-) True G599058

Expression Profile