RNA id: XM_021609062.2


Basic Information

Item Value
RNA id XM_021609062.2
length 2258
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110527649
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30949477 ~ 30953659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGGGTCTCGCTGCCACACCTACGGATCTTGTATACTATGGTAGATAACGGGGCGCCAGCAGATGTGCAGTTCATTTACAGACGGCAGAATAATTACAGTAGTTTATCTTGTTGGAATTTATCAAGACACGAAAACGTCTTCTTCCCTTTCTCGTACCCCTGAAATAATAAAGaTTCTGCCAGAATGCTGCAGAGTTTCTCCCAGTCACTAGACTGGTTCTACTCGGAGCCTCTCTTGTTTGATGATGAATTCTGCCAGAGCTTGATGAAGGACCTACAGTCGCTCCCCACGCCACCCCAGTCCCCTCCATTGAAGACTGGACTCCATGCCAAACCACTTTCCAAGGAGGACCAGTTGAGCTACGTCTCAGACATACTCCTGGAGGATCAGGACCCACAACTAAATTGGAATTGTGACTTTTTGTACGATGGCGGTGCAACCGAGACAAAGGACCAACAGCCAGATGAGTCCGACGACTGTTTATGGCATTGCCTCGGTGATAAGTCTATGGAGAAGCTATCATCTGTGCTCTCCAGCAGCCCGCTGCTCTCGGACATAGACACAAGTATTTTCGAGGAAATTGCCGGCTCCACACTGGATTGCCACAGCGTGGCGCTCGCATGCCAAGCTTTGGAGAATGAGGATTTACTATTGGACAGTCAGGAGCAAGGCAGCGAGTCGACTTCAGACTACGGCTCAGCAGGAGGTGAATTCTCAACGTATTCGAGCAGTGCCAGTGATTCTGaggaggagatagaCGTGGTGACAGTGAAGAGGACCACCAGCTCCTCACTCTCCCAGTCGGTAGAAGAGAGCCGGCGGCGACAGCGCGCCCTAAAGCGGCAACACCTGGAGATCCAGCTGCAGCACAACTACGCCGCCCCCTGCCCTGCATCGCCCCTCCACTCAGAGCCCTCGTCCACTTCCTACCACAAGCGCACCCGGTCCTCCGACTCCCACAGACACCACCATCACAGCTCGTCGGGCCGCTCGTCGCGACACAACCTCAGCAGTCAACAACACCAGTCTAGCTCTAGGCAGTCGACTgatgtggaggatgaggaggagaggaggcatacCCACAACGTGATGGAGAGGCAACGGCGCAACGAGCTGAAGAACTGTTTCCTGCGGCTCAGGGACAACGTGCCTGAGCTGTCCAACAACGACAAGGCCTCCAAGGTGGTCATCCTGAAGAGGGCGTGCGACAGCATCCGTGGCCTGGAGCTGGCGGGCCAGAGACTAAATGACAAGCGAGACAAGCTCCGAGAGAGGCAGGAGCAGCTCAAAGTTAAACTGGAGCAGCTCAGGAGGCAATGGTGTGACTGACGAGATGAGGCACAAAACTAAATCGTTTAGAGATGATTTGAAAATACTGGTCTTGACTTAAGACTTGATGCTGCGCACACTCAATGCATGGTCTCATCCATCCACGGTGGTGACTGTTTAAGAAGTGAAAGTTGCTGAGAGACGGTTAACCCGTATCAGTAAAAAAAGTTTGGTTTGGAACAACAGGTCCATGTTCAGCCTAGTACAATAATGTTAGTCATTTATTGTCCTAGCGATTTGCCAAAGTCATTGTTCATAAAATAGACTATGTAACCAATGTTACATAGACCAACCATATACATCTATGTTGTAGAGTAAGCTATATCAAATCGAGCAGCCATTTTGTTAGTGAAAAATGGACCTTGTGTATATACAGTCTCTTCCACATTCCCCATATGTTATGAAATTCCCACTGGGTAGAActgtctattccatgttggttcagcattgaaatgacatggaaacaacattgattcatcCAGTAGTTtggttttttgttttgtttttttgggcTGGATCCAAAGTTTAAAAATTTAAGGGGTTGAAGTAATGTATGCCAATTATTGCCATTAATTACTAAAACTGTTAATTACTACTTCCATTTACTCACGTGAACTTTAAAGACCTGACCTGTTAAGAATTTGGTGTGTTATTGTGGAACAATGCCTCATGCCTTAACTCATTCTGTTATGTTTTGTTAAAAGCATGATTACTGTACTCTACCTCAAACAGGTCTGAAACCTGAGAATTTGTTTGCTCTCTTGGAAGCAACTATATATAGATTTAGTTGTATATATTTTGGTTTTATTGTATCATaaattattttagtatttttttgggggtggggggttcaTTTGCAAGTTAAAGTTCTGTTTATCAGCAGCACTTTGTTTTTTATAATGTAATAAAGAATGGACAAAAGTCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU679617 lncRNA downstream 8096 30941079 ~ 30941381 (-) True G596356
TU679615 lncRNA downstream 10332 30938944 ~ 30939145 (-) True G596354
TU679610 lncRNA downstream 15629 30933604 ~ 30933848 (-) True G596349
TU679596 lncRNA downstream 25739 30923457 ~ 30923738 (-) True G596335
TU679434 lncRNA downstream 38294 30910951 ~ 30911183 (-) True LOC118965351
TU679683 lncRNA upstream 123239 31076898 ~ 31081848 (-) True LOC110527652
TU679706 lncRNA upstream 145352 31099011 ~ 31107231 (-) True G596441
TU679736 lncRNA upstream 185814 31139473 ~ 31139786 (-) True G596471
TU679761 lncRNA upstream 204887 31158546 ~ 31158821 (-) True G596495
TU680596 lncRNA upstream 619526 31573185 ~ 31573437 (-) True G597314
LOC118965351 mRNA downstream 37330 30897927 ~ 30912147 (-) False LOC118965351
XM_036984423.1 mRNA downstream 263372 30648989 ~ 30686105 (-) True LOC110528941
XM_021609055.2 mRNA downstream 338258 30604097 ~ 30611219 (-) False LOC110527646
XM_021609054.2 mRNA downstream 355626 30585503 ~ 30593851 (-) True LOC110527645
XM_021609047.2 mRNA downstream 554686 30313379 ~ 30394791 (-) False LOC110527641
XM_021609063.2 mRNA upstream 36200 30989859 ~ 31005163 (-) False LOC110527650
XM_021609064.2 mRNA upstream 38179 30991838 ~ 31005163 (-) True LOC110527650
XM_021609065.2 mRNA upstream 73659 31027318 ~ 31037871 (-) True LOC110527651
XM_021609066.2 mRNA upstream 123228 31076887 ~ 31097917 (-) False LOC110527652
XM_036983152.1 mRNA upstream 1122223 32075882 ~ 32174114 (-) False LOC110527654
TU679613 other downstream 12863 30936165 ~ 30936614 (-) True G596352
TU679294 other downstream 86157 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 104853 30844181 ~ 30844624 (-) True G596094
TU679152 other downstream 338209 30604175 ~ 30611268 (-) True LOC110527646
TU678577 other downstream 638543 30310171 ~ 30310934 (-) True G595364
TU679696 other upstream 124853 31078512 ~ 31079318 (-) True G596433
TU681689 other upstream 1464531 32418190 ~ 32420148 (-) True G598354
TU682450 other upstream 2284388 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 2284488 33238147 ~ 33239795 (-) True G599058
TU683215 other upstream 2722420 33676079 ~ 33677297 (-) False G599788

Expression Profile