RNA id: XM_021609064.2


Basic Information

Item Value
RNA id XM_021609064.2
length 1576
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC110527650
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30989859 ~ 31005163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTATGCCTTGTGTACCGGAAGTAAATGTTGAGAACTGATGTGAATTATTTCAGCCCACGGTGTGAAAGAAGATGGACACACTACATAAACTAAAACAATTTGATGCCTATCCGAAAACTCTTGAGGATTTCCGAATTAAAACATGTGGCGGAGCTACGGTCACCATCATAAGTGGTCTCATCATGTTGATCCTGTTCTTCTCAGAGTTGCAGTATTATCTCACTAAGGAGGTCCATCCTGAATTGTTTGTGGACACATCACGAGGAGACAAACTGAAAATCAACATTAATGTGATATTTCCTAACATGCCGTGTGCCTATCTCAGCATTGATGCCATGGATGTTGCTGGAGAGCAGCAGTTGGATGTGGAACACAACCTGTTCAAGCAAAGGCTTGACAAGGATGGCAATTCTGTCACTACAGAAGCAGAGAAACATGATTTGGGACAAGAGGAAGGTGAAATTTTTGACCCTAGTAAGCTAGATCCTGAGCGGTGTGAAAGCTGCTATGGAGCAGAGACAGAGGATTTGAAGTGCTGTAACACCTGTGATGACGTACGGGAAGCGTATCGCAGGCGTGGCTGGGCCTTCAAGAACCCTGACACCATCGAGCAGTGCAAGAGGGAGGGCTTCAGCCAGAAGATGCAGGAGCAGAAGAATGAGGGCTGCCAGATCTATGGCTTTCTTGAGGTCAACAAGGTGGCAGGAAATTTCCACTTTGCCCCTGGAAAGAGTTTCCAGCAGTCCCATGTTCATGTTCATGATCTGCAGAGCTTTGGACTAGATAACATCAACATGACTCACTTGATCAAACATCTATCCTTTGGGAGGGATTACCCTGGTATCGTCAATCCTTTGGATGGCACCGATGTTGCGGCACCACAAGCTTCCATGATGTATCAGTACTTTGTGAAGATTGTCCCAACCATCTATGTGAAATGGGATGGAGAGGTGGTTAAAACAAACCAATTCTCTGTAACGCGACATGAGAAAGTAGCCAATGGGTTGATCGGAGACCAGGGCCTACCTGGAGTGTTTGTATTATATGAACTCTCCCCTATGATGGTCAAAttcacagagaaacagagATCATTCACTCATTTTCTTACAGGACTGTGTGCCATCGTAGGAGGTGTATTTACAGTGGCTGGACTAATTGATTCCTTGATATACCACTCGGCAAAAGccatccagaagaagattgaacTGGGCAAGGCATCTTAGTGGAGTGTTTTGCACAAGGGCAAACCAGACTGTTCATCATTCTCCGGAAGGGCCTATCTGTAAAAGGGAAGTGACTACAAACTGATGCTAACTAACATGGCAATAAACAAAATCAGAATAATCTCCCTCAATATTGGAAGGAAATTTGACCGCTAAGTCTCCCATTTagttatttttgtttttacatcCCTTATCCATACAAAGAATGAAAGACCAAATCACTGGACAGAAGAGTGATTTAACAGATGTTTTTGATCACATTTGATTCATCCCCAGTCCAAGCACATTGTATCTATTAGTTGCTTCCCATATACACGtaacaaatataaacacaacatggaacaatttcaaa

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20367 ERGIC3, ERV46; endoplasmic reticulum-Golgi intermediate compartment protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU679617 lncRNA downstream 50457 30941079 ~ 30941381 (-) True G596356
TU679615 lncRNA downstream 52693 30938944 ~ 30939145 (-) True G596354
TU679610 lncRNA downstream 57990 30933604 ~ 30933848 (-) True G596349
TU679596 lncRNA downstream 68100 30923457 ~ 30923738 (-) True G596335
TU679434 lncRNA downstream 80655 30910951 ~ 30911183 (-) True LOC118965351
TU679683 lncRNA upstream 71735 31076898 ~ 31081848 (-) True LOC110527652
TU679706 lncRNA upstream 93848 31099011 ~ 31107231 (-) True G596441
TU679736 lncRNA upstream 134310 31139473 ~ 31139786 (-) True G596471
TU679761 lncRNA upstream 153383 31158546 ~ 31158821 (-) True G596495
TU680596 lncRNA upstream 568022 31573185 ~ 31573437 (-) True G597314
XM_021609062.2 mRNA downstream 38179 30949477 ~ 30953659 (-) True LOC110527649
LOC118965351 mRNA downstream 79691 30897927 ~ 30912147 (-) False LOC118965351
XM_036984423.1 mRNA downstream 305733 30648989 ~ 30686105 (-) True LOC110528941
XM_021609055.2 mRNA downstream 380619 30604097 ~ 30611219 (-) False LOC110527646
XM_021609054.2 mRNA downstream 397987 30585503 ~ 30593851 (-) True LOC110527645
XM_021609065.2 mRNA upstream 22155 31027318 ~ 31037871 (-) True LOC110527651
XM_021609066.2 mRNA upstream 71724 31076887 ~ 31097917 (-) False LOC110527652
XM_036983152.1 mRNA upstream 1070719 32075882 ~ 32174114 (-) False LOC110527654
XM_036983151.1 mRNA upstream 1070719 32075882 ~ 32174198 (-) False LOC110527654
XM_036983149.1 mRNA upstream 1070719 32075882 ~ 32174535 (-) False LOC110527654
TU679613 other downstream 55224 30936165 ~ 30936614 (-) True G596352
TU679294 other downstream 128518 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 147214 30844181 ~ 30844624 (-) True G596094
TU679152 other downstream 380570 30604175 ~ 30611268 (-) True LOC110527646
TU678577 other downstream 680904 30310171 ~ 30310934 (-) True G595364
TU679696 other upstream 73349 31078512 ~ 31079318 (-) True G596433
TU681689 other upstream 1413027 32418190 ~ 32420148 (-) True G598354
TU682450 other upstream 2232884 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 2232984 33238147 ~ 33239795 (-) True G599058
TU683215 other upstream 2670916 33676079 ~ 33677297 (-) False G599788

Expression Profile