RNA id: TCONS_00034100


Basic Information

Item Value
RNA id TCONS_00034100
length 1031
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_017085
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 2281624 ~ 2284813 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgttgaTGCAATTTGCTCttctgataacacacacacacacacactcctgagtTCAGAGGTCATTGAGTCAAGCATTAACCAGCAGCGGTAAATCCTCTAAATGATCACGGGTTTCAGCTTTACCTCCAGCTTTTTGTTTGGGTTTGTGTAGTGTTCCTCCAGTTTTCCCGCGGTGCAGGAGCTGATGAGTGCTGTGTTTCTGGACGAGCTGCCGGGATGGTTCCTGTGGACGGGGATCTTCCTCCCTGTGACTGCGCTACTGCTGCTCCTCATCGCTTTCTTCAGCGGCAAACTCACACACACAGAGCAGCAGCTGGCCGTGAGCGCAGACCCTCGACAAACAGCATATCTGCATTGTTTCAGACAGCAGACAGAGAAAAGGagacacacaccacacacacacaagaccaGATGAAGAGCTTTGGAGGAACACACACACGACCATACACAAACAAGCACAGCCGCAGAActctggagaaacacacacacatacacacagtagtGTACTACAGTACTTGAATGGATATGCTGTTGTgattcaacagttgctatggttacacaacaaccacaataaaaaaaatctgctgtggtgatcctacagttgctatggtaacaaccacAATAAATGATCTGTTATGGTaattatacagttgctatggtaacaactataaTAAATGGTCTgctgtggcgattctacagttgctatggtaacaattaCTACAATAAATGATGTTGTTATTATtctagttgctatggcaacaactACAATAAAtgctgttgtgattctacagttgctatggtaacaacacctACACCTCATAGtccgttgtggtgattctatagttgctatggtaacacaactatctCAATAAATGATCCGTTGTAgtgattgtacagttgctatagtaGCACCGACACTAAATAGtccattgtggtgattctatagttgatATGGTAACAACAACcacaataaaaaatatgctgtggtgatcctacagttgctatggtagcacaaCAACCACAATAAATGG

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0005391 sodium molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034099 lncRNA upstream 15223 2261933 ~ 2266612 (+) True XLOC_017084
TCONS_00036362 lncRNA upstream 67414 2213689 ~ 2214421 (+) True XLOC_017082
TCONS_00036361 lncRNA upstream 119468 2161082 ~ 2162367 (+) True XLOC_017081
TCONS_00036360 lncRNA upstream 556787 1663759 ~ 1725048 (+) True XLOC_017074
TCONS_00036538 lncRNA upstream 926152 1354663 ~ 1355683 (+) True XLOC_017070
TCONS_00036540 lncRNA downstream 196097 2480910 ~ 2481815 (+) True XLOC_017087
TCONS_00036363 lncRNA downstream 222087 2506900 ~ 2508095 (+) True XLOC_017088
TCONS_00034102 lncRNA downstream 304601 2589414 ~ 2604405 (+) False XLOC_017089
TCONS_00034112 lncRNA downstream 453685 2738498 ~ 2739762 (+) False XLOC_017092
TCONS_00034118 lncRNA downstream 686663 2971476 ~ 2972249 (+) True XLOC_017094
TCONS_00034097 mRNA upstream 39881 2227860 ~ 2241954 (+) False XLOC_017083
TCONS_00034098 mRNA upstream 39972 2240278 ~ 2241863 (+) True XLOC_017083
TCONS_00034096 mRNA upstream 75525 2139436 ~ 2206310 (+) False XLOC_017081
TCONS_00034095 mRNA upstream 104361 2134816 ~ 2177474 (+) False XLOC_017081
TCONS_00034094 mRNA upstream 135289 2099243 ~ 2146546 (+) True XLOC_017080
TCONS_00034101 mRNA downstream 176051 2460864 ~ 2479450 (+) True XLOC_017086
TCONS_00034103 mRNA downstream 304601 2589414 ~ 2609270 (+) True XLOC_017089
TCONS_00034104 mRNA downstream 358042 2642855 ~ 2647566 (+) True XLOC_017090
TCONS_00034105 mRNA downstream 384204 2669017 ~ 2679598 (+) False XLOC_017091
TCONS_00034106 mRNA downstream 390179 2674992 ~ 2679683 (+) True XLOC_017091
TCONS_00034086 other upstream 889180 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034041 other upstream 1963730 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034116 other downstream 623738 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 2790111 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 2821755 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 3139149 5423962 ~ 5424096 (+) True XLOC_017119
TCONS_00034155 other downstream 3389217 5674030 ~ 5697001 (+) True XLOC_017120

Expression Profile

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