RNA id: XM_021608266.2


Basic Information

Item Value
RNA id XM_021608266.2
length 2071
RNA type mRNA
GC content 0.50
exon number 2
gene id gdf5
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33146428 ~ 33149825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGTCTCTTACAAGATATCGAGCAGAATAGTTGGAGTTGGAGTTTAAGAGAAGTCAAGTTTTCTCCTCTCAATGCAAACCTTGTCGGACATCTACTGCATATTGGAAAGCAAGACCAGCAACAGGACATTTGCATCACTATGGTACTGAATAGCGGCTCTGGGAGTAAAGGTTTGCACAGTGTAATTTACCATAGAACACTAACTTCTAGTCCACATTTTCACATTTCCAAACTTGTTCATGTTTACTTATTTCAAACGGGAAAAGCCTGTGCGCATTTCTCCCTGCTAAAATTCAAAGGAAGATCAGAGGATGAAAGTACTTAAAAGTGTCCCTCTTTTATTGGGGTGTTGGACTCTCTTATACCTGGACTTTATCCCAGCGTCACTGAGCCATACCGGCATTGCAGAGTGCGCACCCGAGAGCGGAGGAAAGGAGCACACAGACGGGGCAGGTGAAGGAGCCAACCCGGGAATTGGCTCAACTGCCAGGTCAACGGTAGGAAACTACGGCGCAGGGGGTTGGAAGTCTCTAAGTGCTGCGAGGATCACGCGCATTAGAACAGGACCCCCCCTGATAAAGGGCGAGGCAGCCAAAGCGAAAGCTGTGACATCAGTGTCATCACCGCACAGCGTAACAGTCAGCCGTGCTCGTGGAGCTGTCAATTTGGGGCCCGAGGAGGCTGTGCGCTATTGGGTACCCGGCGGGGATGCTACTAAAGCAGCAGCTGCGCCTGCTCCCGTGGCGTTGAGCATACAAACAGGCAAAGGCTCAGGCAGGCCTGGACAGAGCAAAGGAAACACTGTCCCCAGAGCTGCAACACCAGCACGAACTGCACAGCAAAAGGTCGTTGATGTGCAAAAGCACATCGTTCGGTTGGCCCAAATGAGTGTCAAAGCAACGGGCAAACTTAACGGCAGATACTCTCCAAAGCTTCTATTGGTAACTCCGCATGACTACATGTTGTCACTCTATTGGTCACTATCCACGGGAGGGGTGAACACTAGTGTGCTGCACGAGGCTGGCATGGCCAACACCATCACAAGCTTTGTGGATAAAGGACAAGATGCCCGTATTCCCCAGTTGAGAAGACAGAAGTATTACTTCAACATCAGTTCCCTGGAGAAGGAGGGGTTACTGGGTGCTGAGCTGCGTATACTCAGGAAAAGACTGGCTGATCCACACAAAGCACTTTCCACTGACAGAGTTTTCTGCCTGAAGCTTTTCACTTGTGTAGCAGGTAAGCAGAAAGCTACACTGCTCCAAACTCAAACCATCAAGGACCACAATTCACCCAAATGGGAAGTGTTTGACATTTGGAAACTATTCAAGAATTTCAAGAACACCGTCCAGCTTTGCTTTGAGCTGGAGGGTTTAGAACGGGGACGCCCCGTGGACCTCAGGGCACTGGGCTTCAGTCGTCTGGGCAGGCAAACCAAAGAGAAGGCCTTTTTCCTCATGTTCGGGCGCACCAAGAAAAATGACTTGTTCTACAACGAGATCAAAGCTCGGTCTGGCCACGACAACAAGACTGTGTACGAATACCTGTTCACTCAGCGGCGCATGCGCCGAGCTCCAACCAACCGCGGCAAGAAGCTGGCCAAGAACCCCAAGCCTCGTTGCCACAGGAAGCAGCTGCACGTCAACTTCAAGGAGATGGGCTGGGACGATTGGATCATTGCCCCACTAGAGTATGAGGCCTACCACTGCGACGGGGTATGTGACTTCCCTATTCGCTCGCACCTCGAGCCCACCAACCACGCCATCATCCAGACGCTCATGAACTCCATGGACCCCGACTCGACTCCGCCCACCTGCTGCGTGCCCACTCGCCTCAGCCCAATCAGCATCCTCTACATTGACTCGGCCAATAATGTGGTCTACAAACAGTATGAGGACATGGTGGTGGAGTCCTGTGGCTGCAGGTAGCAATGGACGAAAGACCCAGCTGAGGTCTTGGTTTTATAGTTCAGCCTGAAGAGTTTGAGTTAAATCTTTTGAGTAAACAGATTGTTAAACactcaaaagttttagaacactgagttattcaagggttttaatttatttgta

Function

GO: NA

KEGG:

id description
K04664 GDF5; growth differentiation factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU682293 lncRNA downstream 39205 33106979 ~ 33107223 (-) True G598917
TU682268 lncRNA downstream 59899 33086330 ~ 33086529 (-) True G598892
TU682051 lncRNA downstream 207755 32938370 ~ 32938673 (-) True G598696
TU682048 lncRNA downstream 211807 32934354 ~ 32934621 (-) True G598693
TU682047 lncRNA downstream 212393 32933503 ~ 32934035 (-) True G598692
TU682434 lncRNA upstream 25770 33175595 ~ 33175859 (-) True G599047
TU682435 lncRNA upstream 26175 33176000 ~ 33176295 (-) True G599048
TU682446 lncRNA upstream 55512 33205337 ~ 33215908 (-) True G599055
TU682451 lncRNA upstream 87534 33237359 ~ 33237955 (-) False G599058
TU682453 lncRNA upstream 90917 33240742 ~ 33241142 (-) True G599059
XM_021609099.2 mRNA downstream 147555 32959859 ~ 32998873 (-) True LOC110527668
XM_021609098.2 mRNA downstream 195682 32941906 ~ 32950746 (-) True fam83c
XM_021609096.2 mRNA downstream 233288 32898346 ~ 32913140 (-) True LOC110527666
XM_021609097.2 mRNA downstream 233450 32898346 ~ 32912978 (-) False LOC110527666
XM_021609089.2 mRNA downstream 324031 32792180 ~ 32822397 (-) False LOC110527664
XM_021609102.2 mRNA upstream 183171 33332996 ~ 33362210 (-) False oser1
XM_021609103.2 mRNA upstream 183171 33332996 ~ 33362244 (-) True oser1
XR_005052570.1 mRNA upstream 190845 33340670 ~ 33342591 (-) True LOC118965284
XR_005052735.1 mRNA upstream 351382 33501207 ~ 33501261 (-) True LOC118965409
XM_021609113.2 mRNA upstream 527519 33677344 ~ 33746418 (-) False LOC110527676
TU681689 other downstream 726280 32418190 ~ 32420148 (-) True G598354
TU679696 other downstream 2067110 31078512 ~ 31079318 (-) True G596433
TU679613 other downstream 2209814 30936165 ~ 30936614 (-) True G596352
TU679294 other downstream 2283108 30862857 ~ 30863320 (-) True G596039
TU679349 other downstream 2301804 30844181 ~ 30844624 (-) True G596094
TU682450 other upstream 88222 33238047 ~ 33238435 (-) False G599058
TU682449 other upstream 88322 33238147 ~ 33239795 (-) True G599058
TU683215 other upstream 526254 33676079 ~ 33677297 (-) False G599788
TU683219 other upstream 526345 33676170 ~ 33677297 (-) False G599788
TU683321 other upstream 620225 33770050 ~ 33774614 (-) True LOC110527679

Expression Profile