RNA id: XM_021609102.2


Basic Information

Item Value
RNA id XM_021609102.2
length 1893
RNA type mRNA
GC content 0.49
exon number 5
gene id oser1
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33332996 ~ 33362244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGCGTCTGTGTTCTACGTCAGGGCAGAGTGCGTTGTTGCAGAGTCACTGCGAAGTGGTTCGTGTGTAAACAAGATGTTGGAGAAAGAAAAGTCTGGAACTAGCCAAGTAAATACtgcttttgaaaataataatagatTAGAATGAAACTGAATTGATTGTAGTGTGATGCTTGTGGAACGCTAAACCTAATCGAAAAATGCAATAGCTCGCGTCTGTCGCGTCTCATCAATCGATGAGACATTGCTAACAGAGTTAGCTACTTTAGCTAGCCACCTCACTGTTGCTTAATAGCTTGCTGCATTTGAGGCCCGTTTGTCGCAGCGCCTGATAGACCCTACATGTCCAGGCCATCCTCAATCTGGACTGTggacaggagatcctgagttGTCATCCACGTGAAAAGTAAACAGACGCAGAGTGCATCACCCATGGAGCTATAAAAGAACGGGGCGATCAGATCTTCTCCCTGTGTGATCACATTACCTTCTCTGTCAGCTGTGTCATCACACACTCCACGCAACATTGTCCTTGACTGGGATATTTGGAATGCAACTCGAGCTGGGTGGCTGGTCACTACAACCTCCTCCCACTATGGAGGAAGGAGGAAAAGACTGTGAGGACGAGACCCTACAAACTGCCTTTAAAAAGCTCCGGGTAGATGCTGAAAGCTTGCCTGCTACGCTGCACGTCTGTGAGACCATTACTCCAAGAGTGGTTAGCCGAGCCTTTCTAGAGGGTGCCAAGCCCAAACTTAGCTGCCCCAAGGAGAACTGGCATGGTAGTTGTATGAGGAAGACGTCAAGAGGAGCCGTGAGAAGCCAAAGACGCCGGAGATCCAAGTCTCCCATTCTCCATCCTCCAAAGTTCACCTACTGTGGTTCCAAGATGTCGCCCTTACCTGGCCATCTGAAACACAAGAGCCTGCCAGAGGCTGAAGGTTGCAGCTCCTCCCTGGAGATCCCCGCCAAGAAGGAACTGCTCTCCTCGGGCCACTCCTCCCCTGTGTTTGGCGGTGCTGGCTATGAGCCCCACATCCCCGCTGCCTCTGGGGAAGGCCCCACAGCCAAGCTGGAGGGCAGCCCCAGACAGCCCCTGTCTGACGACAAGGATGTCCCAGAGGCAGCTCACTGCGTAGGGGCTGAAGCCAAAACCGGAGCTGTGCCCTCTGACTTCAGGTCCCTGTCAAAGCTCCACGAGGGTGGGGGCCCGTGCCCCTGCGCTCAGAGCGAGTGCCAGTGCACGGGCTGGCAGGGCATAGAGGTCTACTCCTTCACGGGCCTCCGTAACATCCTCTCAGAGTGCGAGAGGAACCTGGCGAGCCCAGAGGATACGTCCCAGACCTCCCTGCAACAGAGAACTCAGACCGATGGGTCCACCACATCAACCTCCCCGCGTTCCTGTTCCGAACAGGCTCGGGCCTatgttgatgacatcacaatagagGATCTTTCTGGTTACATGGAGTACTATCTTTATATTCCCAAGAAAATGTCACATATGGCAGAGATGATGTATACTTAAATAAgtaattgaaaaaatatataaattttGGGGGGTGGCTTAAGGAATGGTTAGGCATGAATTAATTTAAATATAAGGTTTAACTGTTTATTACCGCAGTTTCTCCATTCTCTTCTTTGCAACTCCAGTACCAGAGCTGAAAGACACATTGTATTTTTCTTATTACTTTTGAATTATTTGTTTTCTTTTAATTTTTCATGATTGTCCTTATTTCTGGTTGACAAATGAAGTTGCCAAAGCTCTATCGCAAAAAGTGCAGGTGGGATTTGTTGGTATATGCAAAGCAAACTTGTAATGCCAAGTGTGATTGTTTTCCACGGCCAAAGAGGTTTCCATTTCactcaataaaacatttttgttgAAAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU682994 lncRNA downstream 37306 33290317 ~ 33295690 (-) False G599583
TU682995 lncRNA downstream 37306 33290317 ~ 33295690 (-) False G599583
TU682996 lncRNA downstream 37306 33290317 ~ 33295690 (-) True G599583
TU682486 lncRNA downstream 78408 33254381 ~ 33254588 (-) True G599092
TU682484 lncRNA downstream 79092 33253692 ~ 33253904 (-) True G599090
TU683030 lncRNA upstream 81 33362291 ~ 33362642 (-) True G599614
TU683050 lncRNA upstream 20601 33382811 ~ 33383239 (-) True G599634
TU683051 lncRNA upstream 21621 33383831 ~ 33384133 (-) True G599635
TU683059 lncRNA upstream 31158 33393368 ~ 33416307 (-) True G599643
TU683119 lncRNA upstream 129460 33491670 ~ 33551343 (-) True G599699
XM_021608266.2 mRNA downstream 183171 33146428 ~ 33149825 (-) True gdf5
XM_021609099.2 mRNA downstream 334123 32959859 ~ 32998873 (-) True LOC110527668
XM_021609098.2 mRNA downstream 382250 32941906 ~ 32950746 (-) True fam83c
XM_021609096.2 mRNA downstream 419856 32898346 ~ 32913140 (-) True LOC110527666
XM_021609097.2 mRNA downstream 420018 32898346 ~ 32912978 (-) False LOC110527666
XR_005052735.1 mRNA upstream 138997 33501207 ~ 33501261 (-) True LOC118965409
XM_021609113.2 mRNA upstream 315134 33677344 ~ 33746418 (-) False LOC110527676
XM_021609112.2 mRNA upstream 315135 33677345 ~ 33746699 (-) False LOC110527676
XM_036983160.1 mRNA upstream 319962 33682172 ~ 33746700 (-) True LOC110527676
XM_021609117.2 mRNA upstream 407861 33770071 ~ 33774908 (-) False LOC110527679
TU682449 other downstream 93201 33238147 ~ 33239795 (-) True G599058
TU682450 other downstream 94561 33238047 ~ 33238435 (-) False G599058
TU681689 other downstream 912848 32418190 ~ 32420148 (-) True G598354
TU679696 other downstream 2253678 31078512 ~ 31079318 (-) True G596433
TU679613 other downstream 2396382 30936165 ~ 30936614 (-) True G596352
TU683215 other upstream 313869 33676079 ~ 33677297 (-) False G599788
TU683219 other upstream 313960 33676170 ~ 33677297 (-) False G599788
TU683321 other upstream 407840 33770050 ~ 33774614 (-) True LOC110527679
TU684338 other upstream 1252282 34614492 ~ 34614875 (-) True G600721
TU684513 other upstream 1603237 34965447 ~ 34966786 (-) True G600872

Expression Profile