RNA id: XM_021609117.2



Basic Information


Item Value
RNA id XM_021609117.2
length 713
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110527679
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33770050 ~ 33774908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCAGATAGTCACACAGCTTTTACTTTGAAGACAGCTAGCACACGCTTCCTGTTCGAGCCTGTCCTCTCTACGCCAACACCGTCTCTGTTCAATCTTGTGGACGAAATATGCCAAATGAATTAACGCATTCGAAATGATTATCCGTCTTAGTTAAATTCGGATATTGATTGAAAGAACCATACGCGAATCGGTCGGGAACCCTGCACTTGAATTTGGCTATCTCTGATCATTTTTGTGCCCATGACATTTCCATAGATGGACGTTTCGCGTGTCTTGGATTGGACACTTTATTTACTCTGATTGTCCCTTCGCGAGACCAGTAGTATACCTTCCGGAAGATCAACGCCTCAGTGTCGCGCTAACATATTTTGGTGAAGGTCGTGAGTTCTTCTTGTACTCCACAATGTCTCTGGCTAAGCCTGCAATGCGAGGACTCCTCGGGAAGCGTCTGAGGTTCCACCTGCCCATCGCCTTCGCCCTATCAGTGGTGGCTGCAGCAGCTTTCAAGTACGGCGTAACAGAACCAAGGAAACAGGCCTATGCTGATTTCTACAAACATTATGATGCCACAAAGGAGTTCAACAACATGAGGGAAGCTGGTATTTTTGAAAGTGTCAGGCCAACTGGTGAATAAACCCCTGTTGCATTCCTGGTCTGAGATTGACTGATCGAACATTGCTGTTATGTTCTCATAAATAAACTATTCTCTCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU683307 lncRNA downstream 26637 33739312 ~ 33743434 (-) True G599874
TU683306 lncRNA downstream 26837 33739013 ~ 33743234 (-) True G599873
TU683216 lncRNA downstream 92853 33676731 ~ 33677218 (-) True G599788
TU683218 lncRNA downstream 94207 33674546 ~ 33675864 (-) False G599788
TU683217 lncRNA downstream 94207 33674687 ~ 33675864 (-) False G599788
TU683337 lncRNA upstream 15330 33790238 ~ 33790444 (-) True G599899
TU683339 lncRNA upstream 16746 33791654 ~ 33826037 (-) True G599901
TU683375 lncRNA upstream 76305 33851213 ~ 33851488 (-) True G599935
TU683386 lncRNA upstream 88011 33862919 ~ 33863137 (-) True G599946
TU683395 lncRNA upstream 107760 33882668 ~ 33882919 (-) True G599955
XM_036983160.1 mRNA downstream 23371 33682172 ~ 33746700 (-) True LOC110527676
XM_021609112.2 mRNA downstream 23372 33677345 ~ 33746699 (-) False LOC110527676
XM_021609113.2 mRNA downstream 23653 33677344 ~ 33746418 (-) False LOC110527676
XR_005052735.1 mRNA downstream 268810 33501207 ~ 33501261 (-) True LOC118965409
XM_021609103.2 mRNA downstream 407827 33332996 ~ 33362244 (-) True oser1
NM_001124468.1 mRNA upstream 42315 33817223 ~ 33835858 (-) True ywhaba
XM_021609121.2 mRNA upstream 177067 33951975 ~ 33958325 (-) False abraa
XM_036984425.1 mRNA upstream 1324499 35099407 ~ 35200098 (-) True LOC118965352
XM_036984426.1 mRNA upstream 1837481 35612389 ~ 35612805 (-) True LOC118965353
XM_036983171.1 mRNA upstream 2763230 36538138 ~ 36559210 (-) False LOC110527685
TU683215 other downstream 92774 33676079 ~ 33677297 (-) False G599788
TU683219 other downstream 92774 33676170 ~ 33677297 (-) False G599788
TU682449 other downstream 530276 33238147 ~ 33239795 (-) True G599058
TU682450 other downstream 531636 33238047 ~ 33238435 (-) False G599058
TU681689 other downstream 1349923 32418190 ~ 32420148 (-) True G598354
TU684338 other upstream 839584 34614492 ~ 34614875 (-) True G600721
TU684513 other upstream 1190539 34965447 ~ 34966786 (-) True G600872
TU684544 other upstream 1226972 35001880 ~ 35055228 (-) False G600881
TU684542 other upstream 1227572 35002480 ~ 35055133 (-) False G600881
TU684989 other upstream 1985791 35760699 ~ 35761270 (-) True G601245

Expression Profile