RNA id: XM_021609114.1


Basic Information

Item Value
RNA id XM_021609114.1
length 2546
RNA type mRNA
GC content 0.41
exon number 8
gene id tomm34
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33801778 ~ 33807479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAATCACAGCGGTTTTGCCAATAACGGGAGTTAACGTGATTCTGAAAACCCACTGATCGATGCTCGTGATTAGCTAGTAAACGAGACACGTATTACACCTCTATAGCTAACTTGTTTAAGATATTGAGTTTACTAGCTAACATTATTAGTTAGACGATTTGCGGACGAGTACAGTAGATTATAGCTAGTTACACAACCGGCTTGCCCAGATATCAATATTAATTCAGTCACTGAAAAACAAAGATGTCACAGAAGCGTCGTTCCCAGTCTTGGACAGAGTTGAAACAAGCAGGCAACGAATTCTTTAAAACTGGACAGTATGGGGAGGCTGCTTCTATTTACAGCCAGGCTATCAAAGAAGTGGAGAAGTCAGGAAAGAAGAATCCAGAGGATCTTAGTATCCTGTATTCTAACCGTGCAGCCAGTTATCTGAAGGATGGAAATTGTTGGGAGTGTGTGAAGGACTGTACAGTaTCTCTTGACCTAGTTCCATTTGGCATCAAGCCTCTCCTTCGCCGGGCTGCAGCGTATGAAGCTTTGGAGAGATACAGATTAGCCTATGTGGACTACAAGACAGCCTTACAGATCGACTGTAACATACCTGCAGCCCATGATGGTACCAGCAGAATGACGAAGTGTCTGACAGAGGTGGATGGACTCTCATGGCGAGAGAAGCTCCCACTTATTCCCACTGTTCCGATGGCCATCAAAGAAAAATTGTCTCTGGCAACAAGCCAACAAACAAAGCAACACAATGGCACCAGAGAAAATGAGAAATCTGTCCCAGGAGAGGATTCCATTAAAAAAGCCCTAACCCTGAAAAAGGAAGGCAATGCGCAGGTGAAAAAAGGAGAGTACAAGAAAGCCATAGAGAAATACACTCAGAGCCTCAAACACAATTCCTCAGAAATCACAACCTACACAAATAGGGCACTTTGCTACCTCTCTTTGAAGATGTACAAGGAGGCAGTGCAAGATTGTGGAGAGGCCCTGCGACTCGACTCCGCTAATATCAAGGCACTGTACAGACGAGCACAGGCACACAAGGAGCTGAATGACTACAAAGCTTGCATTGAAGATCTAAACAGCTTGCTGAAAGTTGAGCCAAAGAACACAGCCGGACAGAATTTACTGCTGGAAGTGCAAAAGAAGAAATGAGCTTGTGATTCGGATGGTTGCCTGTGGATGTGAACGACCCTACGCTGACCTGGTGTACATGCCTGAAGTGCCTGTATTCACTCACAGAAGCAGGTTTTCCAATCTATTTCCTGCCCTGTTTAACTTAAATCCACTCAAGATGGAGTATTGCTTTGACTACTACAGGGGAAGCACAGTCAATGCAGTGCATATTTAGCCTTCATATACATCATGCAATCACTGCATGAAACTGAAAATATAGCATTCAACCATTGTTTTACAAGGACTATGCATTTGTATGTATTTCCACTAGCATAAGAGATTTTCACGATCAACTACTGTTGTAGTTGAAGATATAGtacacccaaattacaaaattacattggTTTTACTTACAGACTTACTCTGTAAGCATTCTATGGACGAGGTAGGACAGCAATCCATGCATTGTTTTTGTTTACCTGGTcactgtttcaaatgctaactttttagcattcatggcacaaatccaatgcaagtcaatcGTACCTATATTAGCATTCCCGCACTTAATGTCCAAATCATTTTAAGTAACTTATGAGTTACGCAATCAATATTTAGATACTttaggatgatttggacatgaagcaTGACATTCTAATATAAGCACCTATTTATATTATCTTTAATACATCTATAggtaaactatccctttaagatcgTAGTTATCTTGGGCTTCCGAGTGGCACAgaggtctaaggtactgcatcttagtgctagaggcgtcactcaCTACAGAcacggccatgattgggagtcccatagggcggcgcacaattggcccagcgtcgtccgggtttggccggtgttggccgtcattgtaattaagaatttgttcttctgacttgcctagtttaaataaaggttaaataaatgaacATTTTATGGGTATTTTCATTGAGTCGAGGAAAGTAACACTATACCAGAGAAACAGATGGTTACCGTATTATTGTGAATTTAAGAGAATATTGAAACATCATTACCACCTGTATCACCTAACATGTTGACAATTCTATCAGTAATGCATAATCTTTAATGTAATTTTTTTTCACTAATTAGGATTCAGGAAACAAATGGGACAAATCAAACTTTCATCCTCCCTGATGGGGGCTGAATTGGATGATACTAGTTGTTTTCCATTGTCCAGTTGTTGCTTCAATTAcggaatgtttgaacatcttttTTGTTAAATTTATCTTTGGAATATCAATGCTTTTGCAGTGGTGACACAAGTTAGTGTGGGTGTTTTACATTTCAGCAATGTCATCTGGGTATATTGGTGATTGCAGCACTTTTTTTTCAATTCTGTGAAATGTTGGAACGCTTACCTCATGgtgcaaaataataaagataTGACTTTATACACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU682881 lncRNA upstream 12904 33788517 ~ 33788914 (+) True G599474
TU682880 lncRNA upstream 13846 33787701 ~ 33787972 (+) True G599473
TU682833 lncRNA upstream 52678 33746035 ~ 33749140 (+) True G599429
TU682727 lncRNA upstream 124604 33676203 ~ 33677214 (+) True G599328
TU682725 lncRNA upstream 126672 33674773 ~ 33675146 (+) True G599326
TU682847 lncRNA downstream 8227 33815706 ~ 33836048 (+) True G599442
TU682911 lncRNA downstream 51147 33858626 ~ 33859090 (+) True G599504
TU682913 lncRNA downstream 52647 33860126 ~ 33860483 (+) True G599506
TU682928 lncRNA downstream 74481 33881960 ~ 33882217 (+) True G599521
TU682958 lncRNA downstream 144409 33951888 ~ 33952990 (+) True G599551
XR_005052571.1 mRNA upstream 2090 33774881 ~ 33799728 (+) True LOC118965285
XM_021609111.2 mRNA upstream 147272 33650637 ~ 33654546 (+) True si:dkey-43k4.5
XM_021611116.2 mRNA upstream 177343 33623237 ~ 33624475 (+) True LOC110528946
XM_021611115.2 mRNA upstream 184537 33616189 ~ 33617281 (+) True LOC110528945
XM_021611114.2 mRNA upstream 205475 33595224 ~ 33596343 (+) True or134-1
XM_021609118.2 mRNA downstream 76770 33884249 ~ 33944568 (+) False rims4
XM_021609119.2 mRNA downstream 76770 33884249 ~ 33944568 (+) True rims4
XM_036983164.1 mRNA downstream 724497 34531976 ~ 35053552 (+) False LOC110517647
XM_036983165.1 mRNA downstream 724497 34531976 ~ 35053552 (+) True LOC110517647
XM_036983166.1 mRNA downstream 918922 34726401 ~ 34728809 (+) False LOC118965286
TU682518 other upstream 506290 33290526 ~ 33295528 (+) True G599123
TU682386 other upstream 565182 33235813 ~ 33236636 (+) True G599004
TU680885 other upstream 1791888 32009314 ~ 32009930 (+) True LOC110531742
TU679558 other upstream 2719528 31081721 ~ 31082290 (+) True G596297
TU679426 other upstream 2897931 30903179 ~ 30903887 (+) True G596168
TU683457 other downstream 158810 33966289 ~ 33966755 (+) True G600013
TU683953 other downstream 951868 34759347 ~ 34759658 (+) True G600431
TU684077 other downstream 1163649 34971128 ~ 34971405 (+) True G600531
TU685500 other downstream 2766408 36573887 ~ 36576072 (+) True LOC110527686
TU686155 other downstream 3282145 37089624 ~ 37090756 (+) True G602295

Expression Profile