RNA id: XM_021609121.2


Basic Information

Item Value
RNA id XM_021609121.2
length 2739
RNA type mRNA
GC content 0.46
exon number 2
gene id abraa
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33951832 ~ 33958325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTTTATTTAAAGCGGAGCAAAGGCAGCGAAGGATTATttcaactcactcactcactcactgactttccctacaacatcaacacaatatctTGTAAGCACGGTCAAGCAGGAGCCATGATGAGTACCAGCCAGGAGGATAAACCCTTTGTTAGGGCTGTGAGGAAGATCAAATGTGCTGCCATGGTCCACAGTCTTGCCAAGAGCTGGCAGGGCTGGGCCGACGAGAACTTGGTCAAACAAGAGACCATACCCTCTGGGTGGATGCCCACCTCCATCATTGAGGACGAAGAAAGGGAGAAGCAGAACGAGACAAAAATCCTAGTCAAGACACGTGTGGTCGAGGCGGACACCGACAGCGGCAGTCTGATCCGAACGGGTGAGGTGATCAAGAGCCACATGCCAAAGTACAGTGAGTACAGCACTGACCTGGTATGCTCAATCAAGGACAAGATCCAGATGGCACCTGAGGATGCCAACAAGCCCTTCCTGGGCAACGAGTCACCCACCCGGAGACGTCTGGGTGTGAGAGCTCAGGTACATCTGGGTAGTCAGGAGCGGAAGATGGGCTCCCGTAGCAGCAGCCTGGACACAGAGGACAGCGGGTTGGGGGAGGAGGCCGGACTCAGCGACAACAGCGACCAGAGCGACCTGAACCAGCTGAAGAAACAGATCAATAGGCCCAAGATTAGAGTCACCACCATGGGTGACATCAAGAGCAGGTGGCAGCAGTGGTCCCAGCAGCACGTAGAAGGTCAGAAGCTCAACCCCTTCAGTGAGGAGTTTGACTATGAGCATGCCATGGCCCAGCGGTTGCAGAAGGGTGATGAAGGCTACGGACGCCCCAAAGAGGGATCCAAGACAGCCATGCGTGGCGACCGAGCCCAGAAACATGTGTATAAAGAAATGGAGGAGTTGTGCTGGATCGTGAAGGACATGGGCCTCAAGGACAAGAACGGAAAATCCTACATAACTTTCGGCAGGCTGTTTGACCGCTATGTCAAAATCTCGGACAAAGTGGTGGGCATAGTTTTGCGCTGCCGCAAACACAAAATGCTTGACTTTGAGGGAGAGATGCTGTGGAAAGGCCAGGATGACCATGTCGTCATTACTCTGAGAGATGTGAAAGAAGACTGAACCTGCAGATGATCTAGACTTTGAcctacacctctctcctcacaaTTGACCTAGACTCACAAGTGCCTTTCATATTCTGACCAGCAACAGTCCAGGAGTAGATGTCTTAAGCATTCTAACCATGATAGCCACTGGTCATGAGTTCAACCTCAGTAGGATATTCTAAACATGCTGCAggccatttaaaaaaattacatgACAAAATAAAGTCAGAAAAAAAACATGTGGTTTGTGGACACAATAGTGATGTGTGGGTTGACTCAAAACCCGCAGTCGATGCAGTTATACAAAGAGAAAACAATACATAAAAAAATCCATGAATGTATAACTCTTGTGAAAtttatatctataggctacactgAGTTTTTTCATTAGTGTGTAAGCCTAAGCTTTAGGACATAACTGTTCGTGCTCCACATAGCCTAATGCCAAATGCTTATGGTAATGGGCAGAAAGAGTTCATGTTGATCCACTGATTAAATAAGAGAAACGTTTGCaaaaatggagagttgaaaataaagaagTGGTAAAAAAAttggtgaagtggtaaaagaggatgaaagcagtgttactgtatgttactgtatgtctaatgattgtgaggcgctatacaaATTTGACAGTCACAAGACAGGTACTTATAAAAGGCCTATGGCACATCAtgggaactgtagcctactgttcaggtgggttaaatggaaactgaaatctggacactgactgtaggtctataacctttGCTAGCGGTTAGAAGCAttgggcctgtaaccgaaaggtcacaGATTCATATCCCagagtagactaggtgaaaaatctgccgatgtgcccatgagcaaggcaattaatcccaattgctccagggtcgccatcaataatggctgatccctaGCTCTGACCCCACTCTCATGGGGAGTAGAATACGCAAAAAAACGAATGTCCAATTCACACGTGTGAAATAGGAAAAATGCAAGTGTACATTTTGATtcgggaagaggagtggagaaaatTATTTCTTTCAGGATCTTGAAAGAATTTGAATGTGTAGTTAGTGACCTTCTGTAGAGGTGCTACATAAAATGTGGCTCCAAGCagaactgaaatcttatcagtgTCAAATGACCAAATCTTATTTGGTcattttcacagctttctatttccttacGAGCGTGCAATGGCCAAGAACATACTTCAATTTTATTGCATTTTCTAGATTGTATCCTTCATTCTATCGATGTATTACATTattcttgtcacgccctgatctgtttcacctgttcttgtgattgtctccacctcctccagctGTCGCTTATttttcccagtgtatttatccctgtgtttcctgtctctctgtgccagtttgtcttgtatgttttcaagtcaaccagtgtgtttttcccatACTCCTGTTCTCCATTCTCTTTTTCTAGTCttcccagttttgacccttgcctgttttttctggactccgtacccgcctgcctgacccttCTGCCTGCCATGACATctagcctgtctgccactctttaCCTCTTGGACTCTCCTCCTGGAATCTGTTTTTGACcatttgcctgtccacgaccattctcttgcctactttTG

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU683403 lncRNA downstream 13564 33910872 ~ 33938411 (-) True G599961
TU683395 lncRNA downstream 69056 33882668 ~ 33882919 (-) True G599955
TU683386 lncRNA downstream 88838 33862919 ~ 33863137 (-) True G599946
TU683375 lncRNA downstream 100487 33851213 ~ 33851488 (-) True G599935
TU683339 lncRNA downstream 125938 33791654 ~ 33826037 (-) True G599901
TU683453 lncRNA upstream 5760 33964085 ~ 33964314 (-) True G600009
TU683456 lncRNA upstream 7324 33965649 ~ 33965881 (-) True G600012
TU683465 lncRNA upstream 12399 33970724 ~ 33971437 (-) True G600021
TU683487 lncRNA upstream 30239 33988564 ~ 33990541 (-) True G600043
TU683488 lncRNA upstream 33493 33991818 ~ 33992079 (-) True G600044
NM_001124468.1 mRNA downstream 116117 33817223 ~ 33835858 (-) True ywhaba
XM_021609117.2 mRNA downstream 177067 33770071 ~ 33774908 (-) False LOC110527679
XM_036983160.1 mRNA downstream 205275 33682172 ~ 33746700 (-) True LOC110527676
XM_021609112.2 mRNA downstream 205276 33677345 ~ 33746699 (-) False LOC110527676
XM_021609113.2 mRNA downstream 205557 33677344 ~ 33746418 (-) False LOC110527676
XM_036984425.1 mRNA upstream 1141082 35099407 ~ 35200098 (-) True LOC118965352
XM_036984426.1 mRNA upstream 1654064 35612389 ~ 35612805 (-) True LOC118965353
XM_036983171.1 mRNA upstream 2579813 36538138 ~ 36559210 (-) False LOC110527685
XM_036983172.1 mRNA upstream 2579813 36538138 ~ 36559210 (-) False LOC110527685
XM_036983175.1 mRNA upstream 2579813 36538138 ~ 36559210 (-) False LOC110527685
TU683321 other downstream 177361 33770050 ~ 33774614 (-) True LOC110527679
TU683215 other downstream 274678 33676079 ~ 33677297 (-) False G599788
TU683219 other downstream 274678 33676170 ~ 33677297 (-) False G599788
TU682449 other downstream 712180 33238147 ~ 33239795 (-) True G599058
TU682450 other downstream 713540 33238047 ~ 33238435 (-) False G599058
TU684338 other upstream 656167 34614492 ~ 34614875 (-) True G600721
TU684513 other upstream 1007122 34965447 ~ 34966786 (-) True G600872
TU684544 other upstream 1043555 35001880 ~ 35055228 (-) False G600881
TU684542 other upstream 1044155 35002480 ~ 35055133 (-) False G600881
TU684989 other upstream 1802374 35760699 ~ 35761270 (-) True G601245

Expression Profile

XM_021609121.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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XM_021609121.2 Expression in each Bioproject

Bar chart with 13 bars.
XM_021609121.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.