RNA id: XM_036983174.1


Basic Information

Item Value
RNA id XM_036983174.1
length 2338
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110527685
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36538138 ~ 36559214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGCCATTATATCATGGAAGAAGAAGCAGCTCAGCGAGTGGAGCCCGATCATCATCTCACACTTCCCTCTTCCCCGAATCCTTTTAAAACTCTCCCCCGGGTTTCTACCCTCCCGAACCTCTCCCTTTCTACCCTCACAACCCCACCCCCTCCCCGACAACGCATCCCAAAACACGGATCAGATCCAATCTTTGTGACCATACCCCAGTTTTGACCCatctgcagcagctactctcccatCCAGTGGTAGTTATGGACTCCGGTGTTATTGAAGGAGGACTCAATGTCACCCTGACCATTAGATTGCTCATGCACGGCAAGGAAGTTGGAAGCATCATTGGCAAGAAAGGTGAATCTGTGAAGAAGATGAGAGAAGAGAGCGGAGCTCGCATCAACATCTCCGAGGGCAACTGTCCTGAGAGGATCATCACTTTGGCAGGCCCCACCACCGCCATCTTCAAAGCGTTCTCCATGATCATCGAAAAGCTGGAAGAGGACATCAGCAGCTCCATGACGAACAGTACGGCCACCAGCAAGCCCCCTGTCACCCTCCGCATCGTTGTGCCAGCCAGCCAGTGTGGGTCCCTCATTGGCAAGGGAGGCTGCAAGATCAAAGAAATCCGAGAGtcgaCAGGTGCTCAGGTACAGGTGGCAGGGGACATGCTTCCTAACTCTACAGAACGGGCCATCACCATCGCAGGGACCCCCCAGTCCATAATTGAGTGTGTCAAGCAAATCTGTGTGGTTATGCTCGAGGTAAGTTCTCCCCCTAAGGGGGTCACCATCCCATACCGACCAAAACCTTCAGGATCCCCTGTCATCTTTGCTGGAGGACAGGCGTACGCCGTTCAAGGACAACATGCGATACCACAGCCAGATCTCACCAAGTTACACCAGCTGGCCATGCAGCAGAGCCCCTTCCCAATGGCCCCAAGCAACCAAGGATTCCAAGGAGGGATGGATGCGTCTGCCCAAACTAGTTCCCATGAGATGACCATTCCAAATGATTTGATTGGCTGCATCATTGGTCGCCAGGGTGCTAAGATCAATGAGATCCGCCAGATGTCGGGTGCCCAGATAAAGATAGCGAACCCTGTCGAGGGCTCCGCAGACAGACAGGTCACCATCACTGGTTCCCCCGCCTCCATCAGCCTGGCAGAGTACCTCATCAACGCCAGGCTCTCCTCTGAAGCTACAGGACTGGCGGCCAACTGATAGAACAGACTCTGCATAGATGTGATCTGcactaatcccccccccccccccccccacatgttACCTTCTACCACCAATCGATCCATCAGTCAGCTCTCTCCTTTTAAAGTGGTCAATGCAACTATCCAACttagtttatttttattattttatgaaAATCACGCCCACCCACCTGATTTTACTTTGATCTGCATTCATTTTTatgtttttactttttttttttattaaggcCTTTTGTGTCCCAGTTGGATGTTTTTAATGATTTGTTCTTAGGTTATTTTTTGTTGAAGGGAGAAAGTTTTCCATATCTTTCTTGACACCATCACAAGAGTATAGGTATAAAAATCTCAATAGGTTTAGTTCGCTAAaagtttttgtatttttgttttatacAAAGAACAAATAAATGTCCAaacaaaatatacttttttttcttctgCATTTTTAGCGCCCCCCCCTAGTTTATTTGAAACGTTTTTCTGGATCCCCTGGTAATTTTATCCATTGCAGAAATTAAAAACTCACCTTCATTTGGTTATGTCACTATGCTCACAAAATTAAAGGGGAAATCGGTCACTGCTGGTATTTTGGGTATGACAAACAGCTCTAACACTACTAGAAGACATGGATATTGCATTTGTTGAAAACAATTTCAAACTGTATGTATTCATGTCACCTTAACTTTTTTGTTTCTGTGTCATTCCTATTTTTCCACCTTCACTTTTGCCCCACCCACCCGTGTGATCATGTTTCTTCAATGGAGGAAATATTTGTTTTAACTACCAAAGGAGAGAAACTCctgaactgactgactggtgtgtctgtgagtgtgaggaGAGAAACTAAGATATTATGAATCGCTGAAACTAAGACAGGGCGATTAAAAATAAATGAATTTCCTGCTCTTTGCTTTCTTTGCTCAAGtcatatttaattttttattatttgCAGGAAATAAAGTAACTTTTGTGCACGTTTTGGAAAGAAATGTAGACATTGGGTGCCACAACATTGTCAAAGAACTACAGAAATAAAGATGTGAAATGCTCAAACTACAAATTCTCgttctgtgttgtgtgtgtgtaacaatgTTCATTGGAAATTAAAGTTGATGGAAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU685619 lncRNA downstream 2093 36535771 ~ 36536045 (-) True G601782
TU685599 lncRNA downstream 26368 36511197 ~ 36511770 (-) False G601765
TU685600 lncRNA downstream 26368 36511197 ~ 36511770 (-) True G601765
TU685594 lncRNA downstream 35513 36502397 ~ 36502625 (-) True G601760
TU685379 lncRNA downstream 225673 36312012 ~ 36312465 (-) True G601566
TU685654 lncRNA upstream 47238 36606449 ~ 36606783 (-) True G601816
TU685656 lncRNA upstream 48165 36607376 ~ 36607591 (-) True G601818
TU685663 lncRNA upstream 53562 36612773 ~ 36613020 (-) True G601825
TU685677 lncRNA upstream 60904 36620115 ~ 36620440 (-) True G601839
TU685866 lncRNA upstream 111417 36670628 ~ 36670870 (-) True G602018
XM_036984426.1 mRNA downstream 925333 35612389 ~ 35612805 (-) True LOC118965353
XM_036984425.1 mRNA downstream 1338040 35099407 ~ 35200098 (-) True LOC118965352
XM_021609121.2 mRNA downstream 2579813 33951975 ~ 33958325 (-) False abraa
NM_001124468.1 mRNA downstream 2702280 33817223 ~ 33835858 (-) True ywhaba
XM_021609117.2 mRNA downstream 2763230 33770071 ~ 33774908 (-) False LOC110527679
XM_036983181.1 mRNA upstream 179480 36738691 ~ 36823857 (-) False LOC110528947
XM_036983180.1 mRNA upstream 179480 36738691 ~ 36838964 (-) False LOC110528947
XM_036983178.1 mRNA upstream 179480 36738691 ~ 36858143 (-) False LOC110528947
XM_036983177.1 mRNA upstream 179480 36738691 ~ 36858144 (-) False LOC110528947
XR_005052573.1 mRNA upstream 179480 36738691 ~ 36858144 (-) True LOC110528947
TU684989 other downstream 776868 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 1482910 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 1483005 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 1571352 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 1923263 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 2029944 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 2030206 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 2031657 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 2043119 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 2503794 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile