RNA id: XM_036983170.1


Basic Information

Item Value
RNA id XM_036983170.1
length 1825
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC110527685
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36538138 ~ 36559214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGACCGCCATTATATCATGGAAGAAGAAGCAGCTCAGCGAGTGGAGCCCGATCATCATCTCACACTTCCCTCTTCCCCGAATCCTTTTAAAACTCTCCCCCGGGTTTCTACCCTCCCGAACCTCTCCCTTTCTACCCTCACAACCCCACCCCCTCCCCGACAACGCATCCCAAAACACGGATCAGGTAACGTTAGCCGTTGTTGAGAAGGAGCAGACCGTCATTTCACGGCAGATTCTTACAGTAGTTTTGGCAAGGGACACAGAATGCATTATAGATTTATCAAACTATGGATTACAACTGACAAGCACGATCCAATCTTTGTGACCATACCCCAGTTTTGACCCatctgcagcagctactctcccatCCAGTGGTAGTTATGGACTCCGGTGTTATTGAAGGAGGACTCAATGTCACCCTGACCATTAGATTGCTCATGCACGGCAAGGAAGTTGGAAGCATCATTGGCAAGAAAGGTGAATCTGTGAAGAAGATGAGAGAAGAGAGCGGAGCTCGCATCAACATCTCCGAGGGCAACTGTCCTGAGAGGATCATCACTTTGGCAGGCCCCACCACCGCCATCTTCAAAGCGTTCTCCATGATCATCGAAAAGCTGGAAGAGGACATCAGCAGCTCCATGACGAACAGTACGGCCACCAGCAAGCCCCCTGTCACCCTCCGCATCGTTGTGCCAGCCAGCCAGTGTGGGTCCCTCATTGGCAAGGGAGGCTGCAAGATCAAAGAAATCCGAGAGtcgaCAGGTGCTCAGGTACAGGTGGCAGGGGACATGCTTCCTAACTCTACAGAACGGGCCATCACCATCGCAGGGACCCCCCAGTCCATAATTGAGTGTGTCAAGCAAATCTGTGTGGTTATGCTCGAGGTAAGTTCTCCCCCTAAGGGGGTCACCATCCCATACCGACCAAAACCTTCAGGATCCCCTGTCATCTTTGCTGGAGGACAGGCGTACGCCGTTCAAGGACAACATGCGATACCACAGCCAGATtcttcctctatctctccacaGCTCACCAAGTTACACCAGCTGGCCATGCAGCAGAGCCCCTTCCCAATGGCCCCAAGCAACCAAGGATTCCAAGGAGGGATGGATGCGTCTGCCCAAACTAGTTCCCATGAGATGACCATTCCAAATGATTTGATTGGCTGCATCATTGGTCGCCAGGGTGCTAAGATCAATGAGATCCGCCAGATGTCGGGTGCCCAGATAAAGATAGCGAACCCTGTCGAGGGCTCCGCAGACAGACAGGTCACCATCACTGGTTCCCCCGCCTCCATCAGCCTGGCAGAGTACCTCATCAACGCCAGCGTAGAGTCCTCTAAATTCTCCTCCTCGAACCCTGAACAGACCCACagcaccagcctcctctgccctcctctctccactactacCACCTTTCCTGCCGCTACCTCTACtgcttcctccttctcttcttcctcctgtTTGGCGCCCCCCTccgcctccatctctctgtccttgtTGGCTCCTCAAGGACCTTCTTCCTCTGACTCACCACTCCCACCCAACTCCCCTGCTGTCCCCTGTGTCTCCGGTCTGCTCAGTCTtaagcccctccccctcctggCCCTCCATGTTGTTTCCACTGGCCCCTCCTCCTCCGGTAACCCTGTCCACTCAGCCAATCCCGAGCCAAAGCTTTCCTCGGAGCTGGGCTCCAAGTCTAAAAGGCGAAGGCTTTCTCCGTACTAAAGCTACAGCCATAATAGAAACTACAGTACAGACGTgaagtgtgtcccaaatggcacttccttatatagtgcactaaatcaaatcaaatttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU685619 lncRNA downstream 6346 36535771 ~ 36536045 (-) True G601782
TU685599 lncRNA downstream 30621 36511197 ~ 36511770 (-) False G601765
TU685600 lncRNA downstream 30621 36511197 ~ 36511770 (-) True G601765
TU685594 lncRNA downstream 39766 36502397 ~ 36502625 (-) True G601760
TU685379 lncRNA downstream 229926 36312012 ~ 36312465 (-) True G601566
TU685654 lncRNA upstream 47235 36606449 ~ 36606783 (-) True G601816
TU685656 lncRNA upstream 48162 36607376 ~ 36607591 (-) True G601818
TU685663 lncRNA upstream 53559 36612773 ~ 36613020 (-) True G601825
TU685677 lncRNA upstream 60901 36620115 ~ 36620440 (-) True G601839
TU685866 lncRNA upstream 111414 36670628 ~ 36670870 (-) True G602018
XM_036984426.1 mRNA downstream 929586 35612389 ~ 35612805 (-) True LOC118965353
XM_036984425.1 mRNA downstream 1342293 35099407 ~ 35200098 (-) True LOC118965352
XM_021609121.2 mRNA downstream 2584066 33951975 ~ 33958325 (-) False abraa
NM_001124468.1 mRNA downstream 2706533 33817223 ~ 33835858 (-) True ywhaba
XM_021609117.2 mRNA downstream 2767483 33770071 ~ 33774908 (-) False LOC110527679
XM_036983181.1 mRNA upstream 179477 36738691 ~ 36823857 (-) False LOC110528947
XM_036983180.1 mRNA upstream 179477 36738691 ~ 36838964 (-) False LOC110528947
XM_036983178.1 mRNA upstream 179477 36738691 ~ 36858143 (-) False LOC110528947
XM_036983177.1 mRNA upstream 179477 36738691 ~ 36858144 (-) False LOC110528947
XR_005052573.1 mRNA upstream 179477 36738691 ~ 36858144 (-) True LOC110528947
TU684989 other downstream 781121 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 1487163 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 1487258 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 1575605 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 1927516 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 2029941 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 2030203 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 2031654 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 2043116 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 2503791 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile