RNA id: XM_021609127.2


Basic Information

Item Value
RNA id XM_021609127.2
length 4423
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110527686
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36573811 ~ 36582978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGAGGATGTGTCGCAATGTTAATTTATTTCACTTGAAGCCACACTTCCTTTTTTACCTTCTCTGTATTTGCGCCTAAAGAGACAGTTGAACGAGACAGGCGCGAACATGTAGCCTAGGCGATGTGTTGATAGTCTCAACATTTGTACTTGATAAACAGTTTAAGTAGATTGTCATCAGAAAAACTGAAGAAAACCTGGATGATGTAACGTTAAGCAGTGCTATTCTGATAATAAGATACACGAGTCGAGACTGGTGAGCGCAGTGGGAGAAACCAGAATTGAAACCTGCCAGTGAAGGTAGGCTTGAAATGAAGATTTGCTTGTCTCTACATTAGTTATTGAAATataatactgtaggcctactttgGTATCAGCATCTGCATGCGTTTGGATTTTCAGCCATGTTTTCTAAATACGTCCTTGTTTTTTGCTTGAGCAGTGAAATAAAGTTGTATCAAATTTGACATGAGTAATTATGTGCACTGAAAGCTTTCTACAAATATTGGCAGTTGTTAAGCTTTATAATACAATAACTTTATTTTTCTAAGAGGGAACTTCTAATGTGATTGTCATGTAGGCTATTATTTTTCAGCACAACATTAACATAATTGCAATTATTTTGTGAGTTTGTGACTTATGATGATTATCTACTTATGGATTTatttgagtgagtgtgtggtgtCAATTCTTTTAAAATTGCAGCTGTTCATTTCAATAATGTAATAATTTGCTATTCCAACCAGCTGTACTAGATTATATATCAGGGGGTTAAATGTTCCTGCATGAAATGCCCTGTAGGCTACTGTAGTTTCACTGAAACTATCATTTGGATGGTCCTGGTTTGGAAGTATTGTGTCAATATAAACCTACTGATACAGTACTTACTTCATGATTTGGGTTCTCCCAGTTGATAATTATTGAAGTAGCCTATTCAATGAATAGGTGAGCTGTTGAGTGAATAGGTGAGCGGTCTGATGGAGAGCCCGTCTTCTACGACCAGGCGTCAGGCCTGGGTCCAGACAAGTCGACAGTGGCTAACCCTGGAAGAACTAGATCCACAGGTACCAGGACCATACATCCACCCCTCTGCCCACCCATCTACCCTACAACGACCAGGATATACCCATCCTTCTGCCCCACATGGACCACCATACACCCATCCCTCTGATCAACACCAGTCTGCATCAGAGGATGACGTCTTCTCAGATGGATGCTCTGCAGGAAAGATTGAGAGCTGGCTTCTGGgctgtggGCTGGAGACAGGCTCAGAGAACTCTAGCAATCATCTGACTGTTGAGTCTCTGCTGAAAGCGAACAGTTTTGAAGATGACCTGAGTCTGGGTGCCGAGGCTACAGCATTAAATGTCGAAGGAGTCTCAGAACTGAGGGTGCTGCTTCCGCCACCCAAACATCTTCACAGATGTGGAGTCACCACCAGTACTCCCCGTCAGAGGCTGGCTCTGCCCTTACTCCACCTCGGTTACAGTATTGCCTCCAGTGGCTTCTCCAACAGCACCAGTAAGGCATCAAGtgtGTCTGAGGTGCTGCAACTGTGTGCAGAGGATGCAGAGGAGACTCTGTACGAGTTGGGGTTCGGATGTGACGAGCCTGATGTTACAGACCGCATCCCCACCCGTTTCCTCAACTTCCCTTCCCAGCTTCACGGTATcaacttcctcctcttcctccagtccCAACTGTACCGCCTCCGACAGGAGGACCCAGGACTCTCTCTGGCCAGTCGTTTCAGGCAGGTAGAGGTGCTAATAGCCATGGCCAATGCCttctactccctctactcccatGTGTCCCGCATGCCCCTTCAGAAGCTCTCCCCTCCCGAGTTCAGCATCTCCCCCACCGCCGACAAGCAGACTGGACGGCGCTTCATGGGAAGCGTTTGCAGCGAACCGAGGTCTCCAGTGGAGCGATTTAAGGACACGGTTTCTAAGATGTGCCTGTATACTAGTTCTGGTGGTTCCACCCAGCTAGGCTCGGACTCTGCCTGCCACGGTCCGGGATTTTCTTCCGGACCTGGGTCTGGGTTGTCCCCCAAGAAGAGAAGCAGCCTGCCTGACTTGGTGGGACTGGTCCTGGAGAATGCCAAGGCAGAGGCTGTATCCAGAGGCATGGAGGAGAAGAATCAGGATACAGGGGACAGTAATGGGATGAGTGCTGCTGTGGACACGAGTACTATGGTgaagaatagagagacagagacacaaggACACATAGACACAGTCAGTGACAAGGAGATGGAGCAGGGTTTGTTATCAGATGTACAGGACACAGGGCATAGTAGTTTAATTAGTTCTGTGGAGCCACATCTGGTCAaggacagagcgacagagacacaGGGATATAGAGACACAGTCAGAGGCAAGGGGTTGGACCAGGGATCGTCATCAGATGGGGATGGGgctgatttagagagagagagagacaccgatgTAACTCCAAATCTTCGAGCATCATCACTTTCAGAATCAGGTCAGCGAGAACCCAGTAGTAGAATGAAGCTGGACTTTTGCCTTACTACTCCAAGTTCTACTTGTGAGGTTGGAGAAACTCACAACACAATTCATCCCACAGACTGGGCAGCGGTGGTGGCACCGGTTGCCAAGGTTACCCATGACGTCATATGTCCTCAGGTCGTTGAGAGTGTGCACCAGGCACTCTACAGCAGTCAACTACAACAGTGGAATAATAACACACAGATGGCGACCATTTTGTCGTCTGTTGTGTCCTGTGAGAATGTCAGATCTGACCGGTCCTTCACCACATCAGACGCACTACACAAATCCAGAGAGGAGAAGGATTTAACTACCAATAACTCAGCCAAGAGTTTAGAGGTCGCCATAACTCCCATTCCAAAGGCTGAGTCTGAGGGTGACTCTCCTTTGCTAGAAACTGGGACACTGGTGGAGTCAACGTTCGTGCCCATAAAGCTCCCTAGTGGAAAGAGGTCCCCTTGTCTAATCACTGTAACTGATGTGGCTTGTAGTTTTAGTTCTGCATACACACCGGAGATGGTTCTCACTCCCAGTGGTGGTACCACTAAGGTGCCTTCAGCAGCCCAGTATTATCCAGGTGTATGGGCGAACAAGCGGTGCCTGAGTCCTCTGAAACCGCCACCAATCCGGGTCCAAGGGGAGGCATCCCACAGTCTTCAACAGGCCAACTCCTTTGAGCTAGAGGAGGTACATAGTGCAGGGGAGGAAGACTTTGGACAGCAAGAAACCATAAGGTCAACATCTTTGTCACTGTCTACTGTCAATCAAAACACAGGTCTGGTGGTTCGAGGGGACAGCATGCAGTCAGACAGTAGTGGCTATGCTGATGAAGACGTCATCTCTTCAGTCTACTCCACTGACAGAGACAAGAGCTGACAGACTGATAAGGGTTGAGTTCCTGCCTGACTCGATGCGCAGGCATTgcattgcatcaaccaatggtcgCGTGCCATGTCATCGACTGTGCAGTTGGGCATCAGATTGCTATATCATACGATGTGGTTAGGTGGTATGTTAAATACCTATCAAGGCATGGTAGTCAGGCAGGAACTTGACCAAGGCCCTCTGGGAACTAGACTCAGGGAACTCTGAGTATTATTTGTATGAGTCACGCAGAAACATGTTCATCCAACAGATACTGATTGTTTGATTATGAGGTATGAGGTCTGTTCATGTTAGTGTTAATGACATTATGAATCAGGTGGCATCAGTCGGTGCATTCTGAATGCTGCCACTCCTATGCAACACCAGTCCTTTGACTGAGTGCAGACAGAGTAATCTGATGGAAAGGATTGCCCTGGAGGTATAGTCCACACATACTGTTTAATTGTGAAGAGATTGTCCTATCTCCATGTATAGTGTTACTGTTGATGACAATCATTAAATCgatgttgtcacaccctgatctgtttcacctgtctttgtgcttgtcttaaccaccctccaggtgtcgcccatcttcctcattatccccagtgtatttatacctgtgttttgtcTGTatccagtttgttttgttttgtcaagcctaccagcgtgttttcccatctgtctctagttcctgttttctagctttcccggtttttgaccattctgcctgcctcgACCCAGCctgtcgttctgtaccttgtcacaccaccctggattactgacctctgcctgccctgagcctgcctgccgttctgtaccttttggactttTCTCTGGACtaatgacctctgcctgccccttgacctgtcgtttgcctgcctctTTGTTATTGTAATAAATGTTTGTTACTTCGAAACTGTCTTCGTCTAggtcttctcctgagccttgacaGATGTACTGTACATAAGATACTACTGCTGTGCCTTTGTGAAAGTTGGTATTTATTTATTGGATGTTAATAAAGATAATTTAAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU685479 lncRNA upstream 17433 36545644 ~ 36556378 (+) True G601656
TU685434 lncRNA upstream 29072 36541282 ~ 36544739 (+) True G601613
TU685433 lncRNA upstream 56645 36511190 ~ 36517166 (+) True LOC110527684
TU685461 lncRNA upstream 64460 36508987 ~ 36509351 (+) True G601640
TU685460 lncRNA upstream 64930 36508676 ~ 36508881 (+) True G601639
TU685504 lncRNA downstream 1888 36584866 ~ 36585079 (+) True G601681
TU685986 lncRNA downstream 275416 36858394 ~ 36858621 (+) True G602133
TU685990 lncRNA downstream 278113 36861091 ~ 36861332 (+) True G602137
TU686153 lncRNA downstream 499969 37082947 ~ 37084573 (+) True G602293
TU686154 lncRNA downstream 502308 37085286 ~ 37085759 (+) True G602294
LOC110527683 mRNA upstream 37774 36470316 ~ 36536037 (+) True LOC110527683
XR_002474151.2 mRNA upstream 56617 36510994 ~ 36517194 (+) False LOC110527684
XM_036984428.1 mRNA upstream 549443 36006411 ~ 36024368 (+) True LOC118965354
XR_005052572.1 mRNA upstream 1845001 34726405 ~ 34728810 (+) False LOC118965286
XM_021609128.2 mRNA downstream 85823 36668801 ~ 36679505 (+) True LOC110527688
XM_036983182.1 mRNA downstream 285762 36868740 ~ 36888120 (+) False LOC110527690
XR_005052574.1 mRNA downstream 285762 36868740 ~ 36896763 (+) False LOC110527690
XM_021609129.2 mRNA downstream 285763 36868741 ~ 36896763 (+) False LOC110527690
XM_021609130.2 mRNA downstream 285764 36868742 ~ 36896763 (+) True LOC110527690
TU684077 other upstream 1602406 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 1814153 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 2607056 33966289 ~ 33966755 (+) True G600013
TU682518 other upstream 3278283 33290526 ~ 33295528 (+) True G599123
TU682386 other upstream 3337175 33235813 ~ 33236636 (+) True G599004
TU686155 other downstream 506646 37089624 ~ 37090756 (+) True G602295
TU688169 other downstream 1916053 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 2001496 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 3543556 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 3623591 40206569 ~ 40206897 (+) True G606452

Expression Profile