RNA id: XM_021609128.2


Basic Information

Item Value
RNA id XM_021609128.2
length 2498
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110527688
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36668801 ~ 36679505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGAGCAGAGAAGAGAACAGTCTATCCAACTTCCCTCTCGACTCTTTGGACTTTGTTTCTCAGGGATGGCTGCATCTATCCTGGAGGAGGAAGATCGTTATGGCTCCAGTTCTTTTGCTATGCTAACCGCCACCTGCAACAAGTTTGGAAGCCCTGTGAGGGACTCAGCCACAACTGGAAAGACCGGCACCGGCAGCACCATTCCAGGCAAGAAGCAGTATAGCATGACCTTAGACCTCCAGAAGAACGGCAGGGGAGGGGACAGCATTGAGAACTCCTATACTGGGTTGTTCAGCTCCGGAGGGAGGCTACTCACACCCACCGAGAGTCCACCACCGTCTTCTGGGGGGTACACGTCTGAGTACAACCCATTCTCCCACTCCTTCCAGAGCTCCATGTCCCAGGAGCAGTCCTTGCTGGTGTCCAAGGCCCACGGCACTGCCGACTGTCTGACCAGCGTCTACACCTCCCTGGACATGACCCACCCTTACGGCTCCTGGTACAAGGCTGGCATCCACCCCGGCATCACCGCTGCCCCCTCCAATGCCACATCTTCCTGGTGGGAAGtccaccccaacaccaactgGTTAAGTGCTGCCCAGCCCCAGACCGACAGCCTCCAGGGCTCCCTCCAGCCCATCCCTCCCCAAAcctccctcagcccccagctgccCAGCTATGCTTCTGACTTCACCTCCATCAACGCAGCTCAGTACCCCTCAGTGAGCCTGGGCTcctcatcacacctcctccagtcctcccagcACATGCTGCCTCAGGACACGTACAAGCCCAAGCAGGTGTCCGGCAGGGGGCAGATGGAGAGTCAGATGGGCCTGAAGCCTTCAGCTGGATCACGAGGGTTTGGAGGAACCACCACTGGCAGGTCCACCTGTGACTGTCCCAACTGCCAGGAGTTGGAGCGGCTGGGGGCCTCAGCTGCATCCCTGAGGAAGAAGCCTGTCCATAGCTGCCACATCCCAGGGTGTGGTAAAGTCTATGGGAAGGCCTCGCATCTCAAGGCCCACCTCCGCTGGcacactggagagagaccctTCGTCTGCAACTGGCTGTTCTGTGGGAAGCGATTCACACGCTCCGACGAACTGGAGAGGCATGTCCGCACGCACACGCGGGAGAAGAAGTTCACCTGCCTGCTGTGTAACAAGAGATTCACCCGCAGTGACCACCTCAGCAAGCACCAGAAGACGCACGCAGAGTCTGCCCTGCAGCAGGGAAAGACCGGGGAGGGAGAGACCCAGGACACCAGGAATGAGGAGATGGCAGACCCCAATAAACCCAACACGGCCATGCAGAATAATGGAGGAGTCCCTAGTGACCCTACTAACAAAGGAGAGAAAACTGGTTCAGGCAATGGGGTGGAAATGAGCAGTGGACTGCTGGAGATCTAACTTCATTCTATATGTTGTCTTGTAGGGTTAGTTGTTGCACCGTTGTTGTGCTGCAAAGTTAACTATGTAGCTAAAAACAAACATAATTATTTTGTATTAGTACATGCTTCCCACACTCTGACATTGTTTGTCAAAGGATGCATTTGACATTGATCAAGATAACCGGACAGGCAGGTTGAAAATACACATTCtgtggaccacacacacacacatgtacacacagccACCACACACAACATTTCTTCATTTTCTGCAAGAGCAGAGGTAAAATTACTAGGAAGCCAAAGAAGAAAATAAGCGTAGATAGCATGAGGGAGTTTATGGGGTATTGCTTACTCCATAAAGTTTAATTTTGTACTTTATTACTTCAGTAAGAAACAGACAAGTTGTGGTTTAATCTGATACTGCATACATTTTGTTTTTGGGTTTGcaaatgtgtgtatgtatgcttcCTCTGATGTATTATTTAATTGTCTATTTACACAAATAATCTAATTTATGTCTTATATTATAAGACTTAAAGATGATCTTGCATTGTGCAGACAGCGTATTATTGCCTAATAAATGGCAAGTTAAAGCTGGCCATTGATGATCATTTAGTAATTAAGATTTTTGTTGTTTCTTTTATTTATTGATTATAACTAAGATGCTGTTGTTGGTGCTGTAGTGTTTGAAGGTTTAGTTGTTTCTGAAAACTACTATTTCTACATAACCTTTCTATTGTGAAGTCTGCACACCTGCCACGTTGATAGTTGATGAAAGCCTTTAGTGGCTTGGCTGATTCTAGAGCAGTGTTATTTTTCTGCCCTTCTCTGTTTTGTGGATTAACCTCTTTTACAACTAACTGTAATGAAAATGACACTTGCAACAGCAATATTAAAACACTTAAGTTAGATAGTGATCAGATGGTATATTTTCATATCCTACATTTATCACACTAATGCATGATGGATATTTTTGATAATAAACTCTGGATATCTCTTTCAtctttccatccctctgtcctctaAATCCCTCTTTCTATTGCCATAATCTTACTGCATGTATTCCCCTCCACCTTGATCTTCTTGCCTCCACCTCTTAAC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU685504 lncRNA upstream 83722 36584866 ~ 36585079 (+) True G601681
TU685479 lncRNA upstream 112423 36545644 ~ 36556378 (+) True G601656
TU685434 lncRNA upstream 124062 36541282 ~ 36544739 (+) True G601613
TU685433 lncRNA upstream 151635 36511190 ~ 36517166 (+) True LOC110527684
TU685461 lncRNA upstream 159450 36508987 ~ 36509351 (+) True G601640
TU685986 lncRNA downstream 178889 36858394 ~ 36858621 (+) True G602133
TU685990 lncRNA downstream 181586 36861091 ~ 36861332 (+) True G602137
TU686153 lncRNA downstream 403442 37082947 ~ 37084573 (+) True G602293
TU686154 lncRNA downstream 405781 37085286 ~ 37085759 (+) True G602294
TU686156 lncRNA downstream 411329 37090834 ~ 37091070 (+) True G602296
XM_021609126.2 mRNA upstream 85823 36573811 ~ 36582978 (+) False LOC110527686
XM_021609127.2 mRNA upstream 85823 36573811 ~ 36582978 (+) False LOC110527686
XM_036983176.1 mRNA upstream 85823 36573811 ~ 36582978 (+) False LOC110527686
LOC110527683 mRNA upstream 132764 36470316 ~ 36536037 (+) True LOC110527683
XR_002474151.2 mRNA upstream 151607 36510994 ~ 36517194 (+) False LOC110527684
XM_036983182.1 mRNA downstream 189235 36868740 ~ 36888120 (+) False LOC110527690
XR_005052574.1 mRNA downstream 189235 36868740 ~ 36896763 (+) False LOC110527690
XM_021609129.2 mRNA downstream 189236 36868741 ~ 36896763 (+) False LOC110527690
XM_021609130.2 mRNA downstream 189237 36868742 ~ 36896763 (+) True LOC110527690
XM_021609132.2 mRNA downstream 228046 36907551 ~ 36913012 (+) True LOC110527691
TU685500 other upstream 92729 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 1697396 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 1909143 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 2702046 33966289 ~ 33966755 (+) True G600013
TU682518 other upstream 3373273 33290526 ~ 33295528 (+) True G599123
TU686155 other downstream 410119 37089624 ~ 37090756 (+) True G602295
TU688169 other downstream 1819526 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 1904969 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 3447029 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 3527064 40206569 ~ 40206897 (+) True G606452

Expression Profile