RNA id: XM_036983180.1


Basic Information

Item Value
RNA id XM_036983180.1
length 6038
RNA type mRNA
GC content 0.47
exon number 30
gene id LOC110528947
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36738691 ~ 36858144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caagtgatcatagggtccagtgaacagcaatagatggagTAGTTGTTAGTTGTTACTACGCTTGCACATGggagcgtttaaagttagcaggctgGGGTAAGCAGAAGCGTCTGCTCCGACATCCCGCGAAGGCCGGTTACAGCGGATGGAGTTAAGTCGGCAGATCAGTCGTGGTGATACGGCGGGGTGCTgtgtcgacaaagggtccagaccagatggcgaaagagGGGAAGTCCTATGTGTTTGACCGGGTGTTCCccaccaacacaacacaggaaCAGGTGTACAACACCTGCGCCAAACAGATAGTCAAAGaTGTACTCGGGGGATACAATGGCACCATCTTCGCCTATGGACAGACCTCCTCTGGAAAAACACACACCATGGAGGGCAAGCTGCATGACCCTCATGGGATGGGGATCATCCCTAGAATTGCAGAGGACATCTTCAATCACATATTTGCAATGGATGAAAACCTTGAGTTCCACATCAAGgtGTCCTATTTTGAAATATACATGGACAAAATCAGAGATCTTCTGGATGTGACTAAAACCAATCTGGCAGTGCATGAGGACAAGAACAGGGTGCCATATGTGAAGGGCTGCACTGAGCGCTTTGTCTCCAGCCCAGAGGAGGTGATGGATGTTATTGATGAAGGAAAAGCCAACCGCCATGTTGCTGTCACCAatATGAATGAGCACAGCTCCAGGAGTCACAGTATCTTCCTGATCAACATCAAGCAGGAGCACGTGGAGACAGAACAAAAACTGTGTGGGAAGCTCTACCTGGTGGACTTGGCTGGGAGTGAGAAGGTCAGTAAGACAGGAGCAGAGGGAGCTGTGCTGGATGAAGCTAAGAACATCAACAAGTCTCTATCTTCTCTAGGAAACGTCATCTCTGCTCTGGCCGAGGGAACCAAGACCCATGTGCCATACCGTGACAGTAAGATGACCCGTATCCTGCAGGACTCTCTAGGGGGGAACTGCAGGACCACCATGTTCATCTGCTGCTCTCCATCCAGCTACAACGACCAGGAGACCAAGTCCACACTCATGTTTGGACAacgagcTAAGACGATCAGGAACACAGCGTCAGTGAATCTGGAGCTGACGGCAGAACAGTGGAAGAAGAAGtatgagaaggagaaggagaagaacagGATGATGAAGGAGACGGTACAGAGGCTGGAGTCTGAGCTCAACAGGTGGATGAATGATGAGGAGGACTCAGAGCTGGATCAGTTGTGTCCTGGTGCTGTGCCTCTTGAGTGTCTGATACCCAGAGATGACAGTCTGGGTCGGCTCCCCAGAGAAGAGAGCTCCTCCTCCGGTCTGAGTCGGCTGCCTAGAGAAGACAGTTCCTCCTCTATAGTGATCAGGATCTCAGAGGAGGAAAGACAGAAGTATGAGGAGGAGATACGCAAGCTCTACAAGCAGCTGGACGACAAGGATGATGAGATCAACCAGCAGAGTCAGCTGGCGGAGAAGCTGAAGGAGCAGATGCTGGACCAGGAAGAGCTCCTGGTCTCCTCCCGTGGGGACAGTGAGAAGGTGTCATCAGAGCTGGGCAGACTACAGATGGAGAGTGACATTGCCAAGGCGGAGGTGAAGGAGGTTCTACAGGCCTTAGAGGAGCTGGCTGTTAACTATGACGAGAAGAGCCAGGAGGTGGAGGATAAGAGTCTACAGAACAAACTACTGGCTGAGGAACTGGCTAAGAAAATGGCCCACCTGATGCGAATTGAGGCGGAGCTGTCTCGTCTACAGGAAGTGAGCAGTCATCAAAGGAAACGCATCGCTGAGGTTCTCAACGGCCTAATGAGGGACCTCTCTGAGTTCAGTGCCATCGTAGGCAACAAAGACATCAAACTGCCGATGGAAATAACGGGTGCGATCGAGGAGGAGTTTACGGTGGCCCGTCTCTACATCAGTAAGATCAAGTCAGAGGTCAAGTCCATGGTGAAACGCTGTCGTCAGCTGGAGAACCTTCAGATGGAGTGTCATAGGAAGATGGAGGAGACGGGAAGAGAGCTGTCCTCCTGCCAACTCCTCATCTCACAGCATGAGGCGAAGATCCACTCCCTGACAGAGTACATGCAGAACATAGAGCTGAAGAATAGACACTTGGAGGATAACTATGACTCTCTGAGTGAAGAGCTGGCCAAACTCCATGCCCAAGagagcaTGTCAGAGATGACAAAGGGAGAGAACCAGGCGGACATCGAAGAGTCTGCTGATGTTAAGAGGGCTCTGGTGCAGCAGATGGAGTCTCACCGTGAGACGCACCACAAGCAACTGGGACGTCTCCGAGACGACATCAACGAGAAACAGAAGATCATTGACGACCTCACTGATCGCAACCATCGTCTTCATCTGGAGTTGGAGCGGCTGAGGAGCGACTTTGACCGTCTTAGGAGTCAGGAGCACCACAAGACATTGCAACTGGAGGAGCTGACATTTCTTCATGAGCGCCACGAGCAGTCAAAGCAGGACCTTAAAGGACTGGAAGAGACTGTGGCCCGTGAACTCCAGACCCTGCACAACCTGCGGAAGCTTTTTGTTCAAGACCTCACAACTCGAGTCAAAAGGcagcatTCAGAGATGGAGCCAGATGATAGCGGGGGATGTAGCCACCAGAAGCAGAAGATTTCCTTTCTTGAGAACAACCTGGACCAGCTTACAAAAGTTCACAAACAGttGGTACGTGATAATGCAGACCTGCGTTGTGAGCTTCCTAAGCTGGAGAAGCGTCTTCGGTCTACAGCTGAGAGAGTGCGGGCGTTGGAAGGTGCACTGAAAGAGGCTAAGGAGGGGGCCATGAAGGACCGTAGACGCTATCAACAGGAAGTGGAGAGTATCAAAGACGTTATGAGGGCCAAGAACCCCCTCCGTAGGCAACATGCTGCCCAGATAGCCAAGCCCGTCCGTCCGGGCCAGTTCCCACTCTGCTCCCCCACCAACCCGTGGGTTCGCATTACTGAACAGCAACACTCCATCCATTTTAGTAACGCCATGTTCCAGATCCCCAGCCAGACAGCTAGCCATCACACCAGCCACCCTGCCGCTCCCCCAGCTACAGCATCTAACTCCAACCCCACCCAGACCAACAATCACCACTCCAATGAGACCAGCCTCCATCAGACCAAGACgcTGCCAGCTGAGCCACCCAACACCACCACAGTGGACAACGGCACAGTAAAGGACACTACAGTGCAGAAGACTACAGTGGATAACCCAACAGTGGACAATGCCGCCACAGTAGATCATTCTCCAGTGAAGCACCCTACAGTGGATaacactacagtgaatagtgCCGCAATGGATAACTCCCCAGTGAAGCACCCTACAGAGAAGGACACTACAGAAAAAGGCTCTACATTGAAGGACCCTACAGTCAACTCTACAGAAATGGTGGATGTTGACAGTGTCAACGGGAACACTACAGATATTAATGACAACAGGAATGATGTGCAGCACTGCGACAACCACAACCAGGAGAACCCAGCCAAACTGCACCACGTCATCCAGCCAGAACAGACTGCCAGCTAGTGACCCATCTCGATAGgtgTCCGGTTCTGCCAAGACTTACCTCGTAAATTCGCATGCTGCGGATCAACGGCCCTCTGATcacccctctatcctcctcccctctttcccaGTAACAccaactctcttcctccctctgtagAACTCTCTGTagccctccaccctctccctttctccacctTTTCCCCTCTGCCTCTCCTGCTTGCTATCCGCCTGTCCACTCTCTTGAACCATTTGTCCAATACTTTGTAGGTGATATGAATATAACGTACTGTACTATGTGGGTATGGGGGTATGTatagtaggcctactgtatggaTTGTGTATACAAAGGAACAATGGCAGCATAGAAAACTCTGTAACTGAACCACTAGGCttaggtcccaaatggcaccctattcccatcgggctctggtcaaaggtagtggactataaagggagtagggtgccattcgACACACAACCTAGAATTGGCAGCTTCCTCTTCCTCTAAGCCCTTACTATTCCTCTGACCCTGTTGGAATGAATTGGAGCTGTACTAGCCAATGAGGATTGGAGCATGATGGTGCAGTGTTCTGTGTGGCAATAGGGCGCGCTCATCCTGCTCCGTCTTGGAGGTACAGTACATTGTGAGGGTAAATGACGAGACATGATCCTTTTAGGCTCTTTTGGCCTTTTCTGTACCTATATCAAAAATAAGAGTATACAGTATAAGCCTAATACCTCTATTCAACACAAAGAGAATCGGTTGGAAAATAGATGTAACGGCATTcataggaagaaggtgaggaccaaggtgcacgCGTTCAAATTATTTATtcgaaactgaacactaaatacaaaataacaaaaggaataaccgaaacagttctgacaGGTGATACACAcactcaacagaaaacaactacccacaaaacacaggtgggaaaaggctacctaagtatggttctcaatcagagacaacaatagacacctgcctctgattgagaaccacacccggccaaacacacagataTAGAAAaaaatagaacacaaaacatagaatgcccaccccaactcccgCCCTGATccaaccaaaatagagacataaaaaggatctctaaggtcagggcgtgacaatagacAACAACCGGACAACAATTGGAGATTGATCGAAGTAATACACACACGCAGAGCACGGCAACGTCTTAATTTAAAAGTGAACATATTCATACATGACCATTTTTCACTCTATTCTATTCATGTATATAGAAGTATATACAATATCGATGTATATGTGCACCCCATTAAGGTTGATTCTGTATTGGACAAGTGTTTTACACAGCTGACTGATGTCATAGTAATAATGATACTGTTTGCTAACTGAGCAGGTTAACATAGCAGACAGCTGTTTCTTTAACTTCCACAATACCATTAAGACAACAGATGACTTCTTCTCTTCCTTATGGCCGGTTGAGTAGTCAGGCCCAGAGCCATATATTTACTTATTTTGTAAATATGGCACTGGTCAGGCCGAGTGTGGTTGGAGACTTCTGAACAGTACTGTAGGTAGAGGGCAGATCAAGATTGCTGTGCTAGTGACAGTGTTTTTTAAATGCTATAAGAAATAGAGCTTACAGCAGCATTATACTCAAGAGTAAATAGCTGATGAATGTGGATGAGTTAGATCATAGGTCATACACAAACTTCCTCCAGCAGGTTCATTGTTGTacttgtatgtgtgtatgtccatAGAATAACAGCAACTACAGTCAGACGCAAGCATGTCTATCCTATGCTGACGCTCCAACCAAGCCCTTCAAGGCTTGCTTTCAGAGTAATGTATGCTTTAATGTATGCTTACTAATGCAGTAACTCTTAAGGTTTTCATCAAATAGGTTATCTGCTATGATGCAAACTACTAAAAGTAAAGAATAAAAAGTCTGGTGAAAAAAATGACAGgattttaaaaaatttaaaagtTGTGCTTCTCAATGCATCAATACAAGACTGAAAGAAGGgagctatatactgtacagtatatatattctatgaagaaagaaagacagagatacTTTGGAGCTGTAACATACTACTTTATCTACCTGGGTTGGAGGTTCTGTAGGTTCCATGGGGTTCCATAGGGTTCTCTAGGATTCTCTAGTGTTCTATATGTTCCATAGAGTTCTAAGGTTCTATAGGGTTTTCTAGATTTCTGATGTACCTTCATCTCAACATGTTTGTTCCGCTGTGATGTGTCCAGTGGTCTTCAATTACATTCACCAACACAGAATGGAAAATATAACTGGGTAAAAAATAACAGATTTAGTAATTGTGTAGCAACTATTTTTATACTGttcattatttaattttttattgttattattgaatGTGATGTTATTTACTGTATATGTTTACTCTTGAGTTGCACATGGTTGTTCTTATGTTAATATATACTATttattcattcattgtttattgAATGCTAACTGATCAGTCAGAATACATTTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU685908 lncRNA downstream 2923 36731597 ~ 36735768 (-) True G602055
TU685866 lncRNA downstream 67821 36670628 ~ 36670870 (-) True G602018
TU685677 lncRNA downstream 118251 36620115 ~ 36620440 (-) True G601839
TU685663 lncRNA downstream 125671 36612773 ~ 36613020 (-) True G601825
TU685656 lncRNA downstream 131100 36607376 ~ 36607591 (-) True G601818
TU685991 lncRNA upstream 22033 36860997 ~ 36861227 (-) True G602138
TU685995 lncRNA upstream 25154 36864118 ~ 36864348 (-) True G602142
TU686604 lncRNA upstream 29857 36868821 ~ 36881944 (-) True G602723
TU686704 lncRNA upstream 156087 36995051 ~ 36996002 (-) True G602809
TU686709 lncRNA upstream 165215 37004179 ~ 37009481 (-) True G602813
XM_021609124.2 mRNA downstream 179477 36542391 ~ 36559214 (-) False LOC110527685
XM_036983170.1 mRNA downstream 179477 36542391 ~ 36559214 (-) False LOC110527685
XM_021609125.2 mRNA downstream 179478 36542395 ~ 36559213 (-) False LOC110527685
XM_021609123.2 mRNA downstream 179478 36542396 ~ 36559213 (-) True LOC110527685
XM_036983174.1 mRNA downstream 179480 36538138 ~ 36559211 (-) False LOC110527685
XM_021609134.2 mRNA upstream 192310 37031274 ~ 37038809 (-) True LOC110527694
XM_021609136.2 mRNA upstream 248784 37087748 ~ 37118234 (-) False gli1
XM_021609135.2 mRNA upstream 248784 37087748 ~ 37208952 (-) True gli1
XM_021609137.2 mRNA upstream 400601 37239565 ~ 37248455 (-) True LOC110527696
XR_002474154.2 mRNA upstream 871215 37710179 ~ 37714146 (-) False LOC110527700
TU684989 other downstream 977421 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 1683463 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 1683558 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 1771905 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 2123816 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 1750191 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 1750453 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 1751904 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 1763366 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 2224041 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile