RNA id: XM_036983186.1


Basic Information

Item Value
RNA id XM_036983186.1
length 4113
RNA type mRNA
GC content 0.51
exon number 22
gene id arhgap9
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36955176 ~ 37014054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACCTAGACATATCGTTTAATCTGAACGAGAATTAATATGATAACCAACAGGTTTAATTACAGGTATTAATATTACAAATCTATAACAGTGTGCACATTTTATACACATTGAAACAAACCCTCACCAATTTGTGAAGCTACaatggtatttcagttttttaaacTGCATCACATGATAGAGGATAACTTGATCAAGGCACAAATAGCACACATCACTGGAGGCTGCGAGTGCGATAATTTCTGGACGTCGTTCGCTCGCTACTGAATGGTCCGgatcagtttttttttattgcaaTAATAATTGATGACACTCGCTGCACCGACCTCCTAAAGAGCATGGAGCTGGCCTGGCAACAGTCATCGCCGTTACCCCGTGCCAGTGTCACCTGTGACCTCACCCTCGCCACCCTTCCCCTTGTCCCCAACACCCCCCACTGAGCCCCAGTCCATCCATCCACCATGCTGTCAGGCAGCTGGCGCCGTTCCCCAATAGCCTCACCCGCCAAGCCCTCAGCCTCCACCAGAGGGAGTATTACCAGTGTGAGCAGTGTGTCCAGCAGGGGGAGCCGTGCCAGTGTGAGCAGCAGTGTTAGCAGTGTGAGTGTGCCTACTGTGTGTGGCGTCCCCAGTGGCACGGTGGTGTTGGAGGCTCAGTATGACTACCAGTACCGCGGGGCAGATGGACGACAGGTCTGCATCCGAGAAGGGGAGCGGTTTATTCTGCTCAGGAAGACGAACACTGACTGGTGGCAGGTTCGGAGGATTGGGGCAGCCAGTAAAGCCAAACCCCTGTATGTCCCGGCTACGTATGTGGTGGAGGTGCCCATCACTCCTCTGTCATCAGTAcgacaacatgtcaacaacaatATGTCAAACCACGGCAACATGAGACTCCTGACccggtcatctctctctccctgctctaaCTACCAGTACTCAGGTACGGGGGTGTGGGTGCCCAAAACCTTCTGTCGTTCCATGGAGGACATCAACTCTCACAGTGCCTTCAGAGGAGTCAACTGTCACAGCCCTAccccaggtctgggaggaggagggggccaCTTCCCAACCATGCCCCTCGCTGCGCTCCCCTCCAACACTGCTACCTATTCCACCGGACAACTCATGGTCCCTGGGGGCCCCAAGACCCCCATGGGCCACTCGGCCCCCATCCCCCGAAGTAAGAGCTCCAGCAACTTGCCGAACCCTTATGAGGAGATCGAGGTGAGGGAAATGGGGCTCGAGATGGGGCTCAGTGGATGGAGCACGCCCATCGGTGGTGCTGCCAAGTCCCTCAGCCAGTGGGAAATGGCAGAGGCCGCCCGCAGACACAGCCATCTGCAGGTAAAGAGGAGGAGCCAAGCAGAACCCCCCAGTCCTGCCCCCGGTCAGCGACCACTACAGGTGCTGGACCTATGGGAGCAGTACTCGGACCCCAGCACAGGGCGATGTTTCTATGCAAACACCGTTACCAAGGAGAGGTCTTGGAAACCCCCCCGCAGAGCCCGCGAACGGACTCCCAGCTGGGCTAGTCCGATGCAGCCACAGACATTTCCACAGGACACCAACAACCTGTCATTACCCATCCCAGGCACAGGAAATGGCAACATGCACAGGCTATCTCCAGACTTCCTCTTCACTGGCCAGAAGCCTGACAGTGTCTGGGAGCTGGAACAGAGTATGCAGCGAGCAGTATCCTCAGACACCATCAGTACAACAGACTTCAGTACAGGAGACAAGGATGCCCTACTGCGTCATGAGACAGAGCAGCTCAGCCACTCACGATCTATGATACTGCCTGAAAACGGCAAGCTGGGTCAGCAGTGCAGAGACTACTCCTATCCTGTGACCAGTGTGGTGGTGGAGCCTCCCTCTCCAGCCAGCTCTCCAGACAGCAACGACGGCTCCACACCTGAGCTGGAGAAGGCAGGTCTGCTGAATAAGACCAAGATAGCAGAGGGAGGCAGGAAGCTGAGGAAAAACTGGAATCCATCCTGGGTGGTTCTGGTTGGGAATAGTctggttttcttcaaggatcccAAATCTCAGACCCCCTCCAGCTGGaAACCAGGGAACAGTTGTCCAGAGAGCAGTGTAGACCTAAGAGGAGCTCAGCTACAGTGGGCCAACAATCTGTCAAGCAAGAAGAACGTCTTCAAGctGAGGACGGTGACAGGGAATGAGTTCCTACTGCAGTCAGAGACAGATTCACTGATTAGAGAGTGGTTCAACACCATCCAGAGTGTAATCGACAGGCTGAACCGTGAGAATCCTCTGGAGAATGTCCTAATGTACTCTCTGAGGAAGGCGGGCAGTGTGGAGATGTTGGACCAGAGTGGAGACGAGGAGGACAGTCGAGGGGGATGTAAAGCATCACTCCCTCGCTCTGCATCCAACCTGGAGAACACAGAGAGGAAGCGCGTTCGGAGTAGACTGAAGAAACTCATCCTGAAGAGACCTCCACTACAGATCCTACAGGACAAAGGACTCATCAAGGACCAGGTGTTTGGCTGTTGTCTGGAgatgctgtgtgagagagagaagaacacgGTGCCTCGCTTCGTCAGGCTCTGCACTGAGGccgtggagaggagaggtctggagacGGACGGTATCTACAGAGTGAGTGGTAACCTGGCTGTAATACAGAAACTACGCTTCCTAGTTAaccatgAGAAGCTGAACCTGGACCAGAGTGAATGGGAGGATATCCATGTCATAACAGGTGCCCTAAAGCTTTTCTTCAGGGAGCTTCCTGAACCCCTGGTCCCTTATGGCTTCTTCACAGACATTGTAGAAACCATCAAGATGTCAGACTACTTGGACAAAGTGGACCGTCTGAAGTGGCTGGTTCTGAGCATGCCTCCTCCCAACCACGACACCATGAGGTTCATGTTCAGCCATCTCAAACGaGTGATGGAGCACGCTAAATCCAACCGGATGTCGACCCAGAACATCGGCATAGTGTTTGGTCCCACCCTGATGCGTCCGGAGCGGGACAACGCTAACATGGCCATCAACATGGTGTATCAGAACCAGGCCGTGGAGCTCATACTCAATGAGTTCGACCGCATCTTCGATCCCAACAACTCAACATCCCTCTGACACCCAGCCAGCCCAGAACACCGAACCCACCCAGCCCCAAGGACCCATTCGAGAGCTAAACCAGTCTCCTAGCCCATCCAGCCCCCATCCCAACCAGTCTGAGGCCCGGGCCCAACCAGCCCTAAGTCCAACCAGGCTGAACCCAACTCAGTGACCTGAACCATCTTGGGACCCAACCCCTATGGTACCCTGTAACACCTTGCATTGAACCCACCCAAACTCAGCCTGAACCAAACACCAAGACCAAAACCAATAAAACCAACAGAACCAGTACACTGTGAAACTGCACCAGCATCTCCTCATGATGTCTCCTTGGCCCCTGTAGTAGCAACACCAGCCTAGTTCACCTCACCCCACGGCAAGGAGAAAAGCATGGATAGAGATGGGAACAGGAGGAAAAGCCAGTATGGATGATATGTCTCCACAGCTCCTTTCTGTAGTGTAGTAGGAGCACCAGCTGACTCTTCCAAACACAAGCAACAGCAGCAAGACTGTTGACTCTATGTGCCACTATCTATAAACGGTCTACAATAAAGTTAATGCAAAGTTTTCAAATTCTATCCTTGTTGTACTAGACTTGTGTCGAACTTGTGTCGTGGCTGGAAAATGCATCCAGGCTTCAAACTTCAAAAGACTTCAGTTTTGTTATAATGGCAAAGCAATAGAACTGAAATACTTACGTTATGTACTTACCTTTACTGAATAGTCTGTGTAGACCTTTGAATCCCCCtggtgttatatatatatatatactatttgATTTGTATGTTTCAATTTTCATTCAAACGTACTGATTTATTTTGTGAAAGTTTGTACATAAGTGTAATATTCTGCCATCAACTTTCACTTTGGAATGTCCCTACCAGATGAACCTGAGGTAAAGCaagaactgttgctgttaaaactgttagaactgttaaagTAAGAACTGTTGTGAAGTAGACAGTTAAGCAACGTATAACATAGCTTTATTGTAGTAGTTCCTTCAATAAAGAATGTGGAGTAAA

Function

GO: NA

KEGG:

id description
K20636 ARHGAP12_27; Rho GTPase-activating protein 12/27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU685990 lncRNA upstream 93844 36861091 ~ 36861332 (+) True G602137
TU685986 lncRNA upstream 96555 36858394 ~ 36858621 (+) True G602133
TU685504 lncRNA upstream 370097 36584866 ~ 36585079 (+) True G601681
TU685479 lncRNA upstream 398798 36545644 ~ 36556378 (+) True G601656
TU685434 lncRNA upstream 410437 36541282 ~ 36544739 (+) True G601613
TU686153 lncRNA downstream 68893 37082947 ~ 37084573 (+) True G602293
TU686154 lncRNA downstream 71232 37085286 ~ 37085759 (+) True G602294
TU686156 lncRNA downstream 76780 37090834 ~ 37091070 (+) True G602296
TU686157 lncRNA downstream 77260 37091314 ~ 37091733 (+) True G602297
TU686163 lncRNA downstream 84089 37098143 ~ 37098371 (+) True G602303
XM_021609132.2 mRNA upstream 42164 36907551 ~ 36913012 (+) True LOC110527691
XR_005052574.1 mRNA upstream 58413 36868740 ~ 36896763 (+) False LOC110527690
XM_021609129.2 mRNA upstream 58413 36868741 ~ 36896763 (+) False LOC110527690
XM_021609130.2 mRNA upstream 58413 36868742 ~ 36896763 (+) True LOC110527690
XM_036983182.1 mRNA upstream 67056 36868740 ~ 36888120 (+) False LOC110527690
XM_021609142.2 mRNA downstream 250339 37264393 ~ 37342630 (+) False LOC110527697
XM_021609145.2 mRNA downstream 250339 37264393 ~ 37342630 (+) False LOC110527697
XM_021609140.2 mRNA downstream 250362 37264416 ~ 37342630 (+) False LOC110527697
XM_021609141.2 mRNA downstream 250362 37264416 ~ 37342630 (+) False LOC110527697
XM_021609146.2 mRNA downstream 250362 37264416 ~ 37342630 (+) False LOC110527697
TU685500 other upstream 379104 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 1983771 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 2195518 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 2988421 33966289 ~ 33966755 (+) True G600013
TU682518 other upstream 3659648 33290526 ~ 33295528 (+) True G599123
TU686155 other downstream 75570 37089624 ~ 37090756 (+) True G602295
TU688169 other downstream 1484977 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 1570420 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 3112480 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 3192515 40206569 ~ 40206897 (+) True G606452

Expression Profile