RNA id: XM_021609134.2


Basic Information

Item Value
RNA id XM_021609134.2
length 4687
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110527694
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37031274 ~ 37038809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACATGTTTTTATCCCCTATCCCTCTTTTTCCCAGCAGGTCACAGGTCAGACAGTCAGGCCCTGGAGGACATGGCCCACTATGACTTCCTGGTGCAGCTGAGAAAGGAATCCTCCCACCACTACCACCAGCACCATCAGCCCCCTAACGGCAGCGCTACAGCCCCAGCCATGTATCACCCTGGCAGCCTGAACCTCCACGATGACCCCCTTCCCATCTGGTCTCCTGGGACGCAGCGCTCACCTGAGGGACAAGATGGCATCCCTCTGAGTCCGGATGCTGTGAGGAACCTTCAGGCATGTCCTTTCTGCCAGCGCACCTACCACCTCGGTGCATCTCTACGCGAGCACATCAAGTTCTGCCATGAGCGGGACGGGGGGCACATAGTGTGCCCGGTCTGTGGGTACACTCCCCGCTATAGGGCACAGATGGAACAACACATGGCACTGCACAGTCAGGTAGAGGATAAGCACCCTGGGTCCGACCATGGCATAGAGAGCAGGAAGTTCAAGTGTCTTCAGTGTGGGAAAGCCTTCAAGTACAAACACCATCTCAAGGAGCACCTCCGCATCCACAGTGGTGAGAAACCGTATGAGTGCTCCAATTGCAAGAAGCGTTTCTCTCACTCTGGCTCCTACAGCTCACACCTCAGCAGTAAGAAGTGCCtgaccggaggaggaggaggcagcggaggaggaggagaggggagctatAACAACGGACATGGCcaccatggggcctactactcCTCCCTTGCGTCGCCCTCTGCAGGTAGTGGAAGGAACAGCAGTAGGATGGGCTCTCCCTACCCTCCCCACACCCAGGAGGAACGTCCTCCAATGGGGTTAGAGAGGAACCTGTATCTCCCTAGAGACCATGGTACGCGTCTCCTCCGGGGCCAGGAGCTAGGCTGGGAGTTGGGCCGGCGGTGGGACCCCACGCCGGAACGCTTTCTCCGGGCCAGTGTGTTCAAGGAGTCCACCCTGCTGCCGTACCTCCATGCCGGCACCGGGGAAAAGTTTGAGCAGATGCTGCAGGCGATGCTgcacagggaggagggagggtcaGGCTCAGCCAGGGAGGAAGGAAGACTGGGGGTTCACAATGGCGGGAGAGATGGGAAGGCATCACCGGAGGCTCCGTTGAAACTAAAACGCGACCGTGCCGGCTCGGGTGATGGCCAGGGGGTAAGTGGAGGGGTAACATGTCGTTGGTGCTCCCAGCTCTTTCCCAGCCCCGCCATCTTACTCCAGCACGAGCGCTACCTCTGTAAGATTTACCGAGAGGCCATGGAGGTGTCTGAGGATCCTCACAGTAAAAaacacctctcccccctctacttctccaccagaccccctctccacccaccaccatcaccagATAACCACAAACCCCCAGCGATGACCAACGGTTTCCCGAAAGACAAGTCTCCTCTCCAGAGACCCAGCTGGAACTCTGTCCCTCAGCAGCTGCTGGTTGCCATGCACTCCCCCTTCCCGCCCAGCCCAGACTCACTTGCCATGAGGTCACATTGGTCCAGCCAGGAGAGTGGCAGGAGTGACGGCAGCCCTGGCCAACCAGCACCAACCAGCCCTGCTACAGACATGTCATCCCCTCCCCCATTGGGGCGAAGACGGGTCCCCTCTTCAGGGTTCGGCTCGCACCTCTGCCTGGACCTGTCCTCTGCCATTCTCAACACTCCTGCAAGCAGAGCCGCCCCCCAGGGAAGGACCCACCGGTCATATAGCTCTGAGAATGACCAACCCCTGGATCTCTCCCTCCCCAAGCCCCAGGAGGGGAAAGCCATAGAGGACAGCAAGCCCTATAATGGACACCCTCACtgggaagagaagagacagaagaccCAGAGAGACCAGGCAGAGAACCAGCACCACCGGAGGCTGAGTGTCAATCTCAGTCCACCTCCTcaccagCATCATGCAGTCTACAGCGGCGCTCATATTGTCGGGGGTTCCATCTACAGTGCCTACCCTCTGTTTAACCCTATGATGCCTGCTGGGCTAGCTGGCTCAGAGCACGATGGGGTTCCCTCCCTGCCCCTCAGCCGTCCAGTTAGCAACCAGGGATTCCTCTCACCCATGACCTACATGATGGAGTCAGACACAGACGCTGTGCTGAAGAGGATCCACCAGGAGAGACGAGCATTAATGGGTGAGGTGATTGGCCGCGGGGGTCTGGACTACCTCTCTCTGatacaggagggaggagagggcgagGGGGGACCAGGGAGGAAGAGACTACAGAAGACAGATGAAGGCCTGTACGCTTGTGACATCTGTGACAAAACCTTCCAGAAGAGCAGCTCTCTGCTCCGACACAAGTACGAACACACAGGTAAGCGTCCTCACGAGTGCAAGATCTGCAAGAAGGCCTTCAAGCACAAGCACCATCTAATTGAACACAGCCGCCTGCACTCTGGAGAGAAGCCCTACCAGTGTGACAAGTGTGGCAAGCGCTTCTCCCACTCGGGCTCCTACTCCCAACACATGAACCATCGGTATGCCTACTGCAGCCTGCACCAGGACCAGGAGGGGGGTGAGGAGCTTCCTCTAACCCCAGGAGGGCCCACCGATGTGGGCCACATGGCCGTGGACACCCCCCTTTCCATGGAGGACACCCCAACATTTCTTAGTGACTCCAGTCTAGATGGGGGGATAGAAGGGAgagtagatgaagaggaggaagaagaggagcacGTGACAGAAGAGACTGAAGGCGGACGTATGAAGGAGGCATGTAGTTTGTCAGGGTCAATGCCTGGTGAGGGATTGGGGCCGAGCCCCAGTCTGGTACAGGGGTCCCCTGTGGggagggacagtgagagagaacagagggagagagacaaagagcagGTCGACAGacacaatgaagagagagagagtgctggtcTAGGGACTCACGGACTAGAGACCAACCATCACTGGGACAAAGACACATTGGAACGAAATGGAGACCAGAACACAGACACATACGAGCTGAGCCCGGAAGCTCCAGTGTCACAACAGTGGACAAGTGTGCCAAAACAATGCATCTAGCTACATGTACAAATAAGGATTAAGAGCtgtgtgaaaatatattttaaaaatgcaCTGTTCAAAATATAGCAAAACTTATACTGTACAGGTACAGGAAGTGACTTCCAATGCAAAGCCATATGAACACAACCAAAATATGAACCACATGAACTGACAGCATAACACAAAGTGCATAGTAAGAGCCATGGGTATGATATTCACGCTGGTCGGTATGTTAGCATGCGCAATGTTGACTACTACATATCTGTCATCACAGCTACCAGTTGACCACTTACGACTGGTTTAAGGTAAAGGTAAAGGAGTATGCACTGCAAGGTGATGTTCATGTTGTTCTGTAGCAAGCAGtgttgttcaatgtgtttccagtTGCCTtatcagtataatacagtattttTTATTTGGCAATACAAGTATTCACTTTTGAAGGTTTTTATATCAGATTTGACATCATGTTCTCCAAAGACCATGAGGTCTCAACTGTATCAAACAATCGACCTCTGTGCTTTAAAATGAATAAGCAATAAATAATAACTATTATTCAAATTAGAATAAAGGATTAAATATGTATTATTTTTTGCCAAAGCTACAAATTGGTTCAGGATATATCCATTATGACTGTGGTCAGCTGTGCATTAATTATGGGCGTTAGTATGCAGATAGATTAGTGCCAAATTATGTAAATGAGTTAGTTAGTTATATTGGCactaatatactgtatctccatacAAACACAGATTTACCATTGGGTTTCCATGGTGACTAATGAATGGCTAATATACTGTCTAAAAGATCAACAGGGAAGCCGGTCACTACAAACGCTCACTGACTTTTACACTGAGCCATTAGGAAGTTGAATGTTGGGTAGCCACCCTAAGCCTGGTAAAGTAAATCGATGTATCCATCCATACCTTACCATATTTCTACACACAACAGAAAAACGAGAGTCCAAATTAAAATGGTTTTATTTTGTTTTCTTTGAAGAAGGTACAAATAAATTAAACTTGTACTGCCTCACAAAATGTTCCATATCTCTTAACAGACATGTGGAGTTGCTTTGTCTCTATTAGAAAAACGCAAATACATTGTCTCGCTCTATGAAATATAAGTGCAGTATTATGCTTGTAACACAGTGTAGGTTCTACTACAGTTGCCCTCAAAGATATTAGCACCCTTGCACGATTCACTATTTCTTCTCAAATAAGTGGAAATTGAAAATAGTTTAATGTTCACACGTTTATTTGTTTGGTTAATAACTGCACAGGACCAAGATCatttttaaaggtccaatgcaaccGTTTTTATtgcaatatcaaataatttctgggtaacaattaagtacattgttttcaatttaaatggttgaaaataaccaaaaatatatttttagcaaagagcaatttatcaagcaagaattttgctaggactgtcttaGAGTGCGGAGGGGAAAAGtgaaaactagctgttactgGCAaaaaggtttggaactcttttgtctttttggtctattaactaatttactgcatggttatgtcaccaggcaggccaaaactccttCCCACCAAAACAGACTGAAATTTCAGCcgatcttttcaaacagctcttacaccaAAAGGGCattataattttcacaa

Function

GO: NA

KEGG:

id description
K23560 ZEB2; zinc finger homeobox protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU686709 lncRNA downstream 21793 37004179 ~ 37009481 (-) True G602813
TU686704 lncRNA downstream 35272 36995051 ~ 36996002 (-) True G602809
TU686604 lncRNA downstream 149330 36868821 ~ 36881944 (-) True G602723
TU685995 lncRNA downstream 166926 36864118 ~ 36864348 (-) True G602142
TU685991 lncRNA downstream 170047 36860997 ~ 36861227 (-) True G602138
TU686744 lncRNA upstream 44256 37083065 ~ 37084079 (-) True G602846
TU686745 lncRNA upstream 47063 37085872 ~ 37086100 (-) True G602847
TU686756 lncRNA upstream 54957 37093766 ~ 37093969 (-) True G602858
TU686746 lncRNA upstream 76060 37114869 ~ 37115189 (-) True G602848
TU686774 lncRNA upstream 95324 37134133 ~ 37134419 (-) True G602876
XM_036983177.1 mRNA downstream 173130 36738691 ~ 36858144 (-) False LOC110528947
XR_005052573.1 mRNA downstream 173130 36738691 ~ 36858144 (-) True LOC110528947
XM_036983178.1 mRNA downstream 173131 36738691 ~ 36858143 (-) False LOC110528947
XM_036983180.1 mRNA downstream 192310 36738691 ~ 36838964 (-) False LOC110528947
XM_036983181.1 mRNA downstream 207417 36738691 ~ 36823857 (-) False LOC110528947
XM_021609136.2 mRNA upstream 48939 37087748 ~ 37118234 (-) False gli1
XM_021609135.2 mRNA upstream 48939 37087748 ~ 37208952 (-) True gli1
XM_021609137.2 mRNA upstream 200756 37239565 ~ 37248455 (-) True LOC110527696
XR_002474154.2 mRNA upstream 671370 37710179 ~ 37714146 (-) False LOC110527700
XM_036983189.1 mRNA upstream 717752 37756561 ~ 37789840 (-) False LOC110527701
TU684989 other downstream 1270004 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 1976046 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 1976141 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 2064488 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 2416399 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 1550346 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 1550608 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 1552059 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 1563521 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 2024196 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile