RNA id: XM_021609137.2


Basic Information

Item Value
RNA id XM_021609137.2
length 3782
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110527696
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37239565 ~ 37248455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACGCGTCGCGCTGAGTAATACCTTGGCTCCATGCCATTATTCAAATAATGACGCGTCAAAGTTGCCTACGCTTATGGGCTACGTGGCATGCCACAAGTGTTTGGCAACTGGAGTTTATTATTCGGTGATATAGTGTAGTGATGACTGTGATCGATAATATACCCTCTCTTGTCCTTCACAGCACTGTGCGTAATAATGTGGCCAATTTGATCACTGTGCGCTAAAGCGCATGTGCCATGCTCAACCGCCGTCTCTctctgctttgtgtgtgtgtgtgtgtgtgttgtcagagaCAGTGCCTGTCATTTCCTTGATACGCTCATTGGTGTGTTCCTATAACGTGTCACAACTTTTGGTGGATTACCCCAGTTCTGTGGAGCATCATTAGGTGTTGAATTACCACTCACGCTCTCTCATCCTTGTCTTCGAGGTATCCACCTGCAGGAACAAGGTCCCTCTGACTGGAACAGTTCAGGAACTGAATGAATGCAAATAGATCAACATCCAAAGCAACTCGGGGAACAACTTTTTCAAACATGCTCTCTTTAATATTATCGGATCTTAAACTTGCGCCTGCTTCTAAAATACATAGTATCCATGTGTCTAGAGAGCCCACCAACATGCTATTTTCTTCTTCCACATTTCTAATGTTTTCATTGATGACGTCTCTGCTGGTGAAGGGACTGGAGACTGCGACCACCGCAGGGACCACGTCTGGCTGCGCGTCTTGTGGCATTCCGCCGATGGAGAAGAATTCGGAGCAGAGGCTCCTGGTTGAGATCGCCAAGCAACAGATCTTGAACAAGCTGCACCTGAAAGAGAGACCGAACATCACCTCGACTGTGCCCAGCGCTGCGCTTATCACGGCTCTCCGCAAACTGCACGCGGGGCGAGTCAGACCGGACGGCACCATTGAACTTGAAATGAAGATCAATGATACAAAAGATCAGGGATATGAAATAGTGAGTTTCGCAGAAATGGATGAGATGGACACTACTGGTGCTCAGCCACGCCTCACCTTCCAGTTCCTGCAGGAGCAAGGCCACAGCATTCAGGTGCTCCAGTCAGCCCTGTGGCTGTACGTCCGCTCCTCTGACGCCCCTAACTCGGGGCCCCGCCCCACCGTCACAGCCCACATCTACCTCTCCGGGCCTGGGGAAAGCTGCTCTAACCGCACCCTCCTCCTAGAGAAGATCCTGGATGTGCAGAAGAGCAACTGGTACACCTTCCCCATTACACACACCCTGCAAGCGTTCATGGACGGGGGCCAGCGGCTGCTACAGCTGGAAGTCACCTGCGCAGAGACTGGGGTAGCCGGGGAGAATGGCGTTAGCCAGAACCTGTGTGAGCTGGGTAAGACCGTGGACATGGTCCACCAGCCGTTCATGGTGGCCCAGGTGCGGCTCCGCGAGGACCCCAAACACATCCTCCAGAAGAGGTCCCTGCAGTGCGGAGATGATGTTACAGTCTGCTGCAAGAAGGACTTCTACGTGAAGTTCAAGGATATCCAGTGGCAGGACTGGATAATAGCTccagaagggtaccacatgaattACTGTATGGGCCAGTGTCCCCAGGCCCTGGCTGGGTCTCCAGGCATCGCGTCTTCCTTCCACGCTACAGTCTTCAGCCAGCTCAAAGCCAATGGCATCAATACAGCAGTGTCTTCCTGCTGTGTGCCCATCCAGCGCAGGCCTCTGTCTATGGTCTACTTCAACTCACAGCACAGCATCGTCAAGACCGACGTCCCTGACATGATCGTAGAGTCCTGCGGCTGTACGTAAAGAAatggaagaaagagaaagacgaGACATTCAGCTAGTTATGCTTTTAGTCTGAGAAGACTAGATTGAACGtgtcacacatgcacagacagatgcaaacacatacatacatacatacttcaCGATCATGTAGTATAGAATTTAAGATATTCCGTCTTCATCAATTCGATAGAGGGTTTTTGAATGCCAATGGGGAATAGTACTGAGTGCTCAAAGGGGTTTGTTCAGTCAATTGGTCATACACAGATAGCACatgacagaaagaggagagagattcATGTATCGCCTTCATTCCTTTTTTAATTTACTGTAAAACTATGAGCTGTTATTATTGTATTTACTTTTatactttgtttttttttgtattactgGTGAGCGTGAGGTGAGCTAAGACAGTAAGATTTATGCAGTCAGTGCCTGGACCTAAGGGAAATGGAGTAGAGCTTACTCTTTTTCTTTGTTTCTAATAAGATGTGTGTTGCATTGACAATTTCCACACATATCCCACGTACATATCCGACTGAGAATGCCCATCATAATATAGTGCCATTGTATACACTAGTATACAAATCTTAAGTTGAAAGTTGTCTAACTCCTTCTAGTCCATTACAAGTATAGTTACATACATTGTAGAGCATTTTGGACTTCCCCACTGTTTTGTAATTTAGAAGGCAAATTGGGTGTTCTGATTCTGAATTCTAAACTGTCTTGAGAGCCATAGAGGAGCTACGTTCTAGAGACTCATGCAATTCTGATGATTTATACAACACAAGACAGCAGTAAAAGCTTTTAAAAAATCTCACTCCTGGGAAACCACCCAGACAGGAGCAGATATCTGATGTGGATAGGTTAAAAATGGTTTCATCAGCATCTGCACTGTATTATTTGTTCAGATAGTCAGTTAGGCAACAGTCTGGCTTTGACGGCATGAACTCAAGGTTATTACTCAGCTGTACAAGCAAACATTTAGCTATTGCCACAGTGTCAGGGAACGTGAAGGTCCATGAAGCACACAGGTCAACAAGCATGTGCATGTTCCAAGGCACATTGTAGTTTGCATTTTCCAAAATCTAAAGTTTAGGGCTGATGTAAATTAGATTAATCCATTCAAGAAAATGAAGTATCTATCTTTGTTTTCGTGCTATAATGTTTACACTAAATGGGTATAATGTGTGTTTATGATAAGTTTAAAGCTGAAACCTCTTTGCTGCTTTGTTACTGGTGTGCATCTTGCGTGTGGTTGGCAGTAAccgtgtatactgtactgtagactttCCTACCCTACCCTGGACTATGGTTCAAAAGTCCCCATATTGCATTGCAGTATGATATGCTAGCATGGCCCTCAGGATCCTATAGCAAACACATCCTGGTTACCTTGCTCTTTAGAACATTAGAATAATAGAACATTATATTGTTTTTCTGCAAGCACTTCCTGTCCTAGAGCTTAATGTATGTCACATTGAGGAGCCATCCTTCCATAGGGAACATGTACTGCAGTCTGGAATGTACCATGATGATAACTAATACCGTTGATTGTGAGACCAAAAAGTGAAAGTTTTTCCAAACAGAAAGCGTCATAACTTTCATGATTGGCAATGATTTCTTCATGAGCACTTTATCGGCTTACTGTATATTTATGAGATTCTGCAACGGGTTGTTCTCTACTGCCATTTCCTATTTTTGGTACTCAGTCACTGCATGTTTAGAACAAGGATACTGGCCAAAATATTGTTATCGGGTTATTTTCGTAAGCCCTTgctttatgtacagtatgtatggccCTTGAAATAACTTCATATTGAATCTGTTGTAAACAGAATTTCTCTATACTGTAACTGGATAATGACACCAGCATTTTGATTGAATATCAATTCCAGTAGATTCTATTGTCTTTTTATATTACATGATATTTTGAATAATTTGTATTAataaactttatttttttatgtgtCTATTGTACTGTATTCCATAATtctattgaaaatgtatttta

Function

GO: NA

KEGG:

id description
K04669 TGFBRX; TGF-beta receptor, other

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU686817 lncRNA downstream 52918 37186312 ~ 37186647 (-) True G602919
TU686815 lncRNA downstream 53884 37185441 ~ 37185681 (-) True G602917
TU686814 lncRNA downstream 54182 37185177 ~ 37185383 (-) True G602916
TU686807 lncRNA downstream 61257 37177871 ~ 37178308 (-) True G602909
TU686806 lncRNA downstream 62716 37176621 ~ 37176849 (-) True G602908
TU686941 lncRNA upstream 92557 37341012 ~ 37342570 (-) True G603028
TU686943 lncRNA upstream 98498 37346953 ~ 37347173 (-) True G603030
TU686945 lncRNA upstream 99447 37347902 ~ 37348196 (-) True G603032
TU686957 lncRNA upstream 119793 37368248 ~ 37368501 (-) True G603044
TU686960 lncRNA upstream 126708 37375163 ~ 37375555 (-) True G603047
XM_021609135.2 mRNA downstream 30613 37087748 ~ 37208952 (-) True gli1
XM_021609136.2 mRNA downstream 121331 37087748 ~ 37118234 (-) False gli1
XM_021609134.2 mRNA downstream 200756 37031274 ~ 37038809 (-) True LOC110527694
XM_036983177.1 mRNA downstream 381421 36738691 ~ 36858144 (-) False LOC110528947
XR_005052573.1 mRNA downstream 381421 36738691 ~ 36858144 (-) True LOC110528947
XR_002474154.2 mRNA upstream 461724 37710179 ~ 37714146 (-) False LOC110527700
XM_036983189.1 mRNA upstream 508106 37756561 ~ 37789840 (-) False LOC110527701
XM_036983190.1 mRNA upstream 508106 37756561 ~ 37789843 (-) False LOC110527701
XM_036983188.1 mRNA upstream 508106 37756561 ~ 37789849 (-) False LOC110527701
XM_021609156.2 mRNA upstream 555359 37803814 ~ 37932459 (-) True LOC110527702
TU684989 other downstream 1478295 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 2184337 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 2184432 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 2272779 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 2624690 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 1340700 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 1340962 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 1342413 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 1353875 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 1814550 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile