RNA id: XM_021609140.2


Basic Information

Item Value
RNA id XM_021609140.2
length 5345
RNA type mRNA
GC content 0.53
exon number 26
gene id LOC110527697
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37264393 ~ 37342630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAGGGAGCCGAAGGGAATctcgtttttctttattttatccAAAGTGTAAGGTTCTCGTTATTTTCATTTTAGAAGTTATTGGATGCGTTCTCTCTGATTTTATCTTCCACGTTCAATGTAGATACCTCTCACGTGTGTGCGGTTTTGAGTCGATTGCGTTTGACAGTGCAGTGGCTTTCACCGTGAGCCAACTCAGCGTTTGGTTAGCCATGGAGCCAACGTTACTAATTAGCTAGCGATTTATTCTTACCATTATTAGTTAGCATTGGGTAAACCATTCGGAGGGTGGTTGACAAGCGGTATCGCTAACTAACCGCATACATATCGGCATTTCTTCAATTGTCTCGTAACCCATGATCTTGTCATCGATATTTTTTTTAGTCGAATTTGTTACGTTAGCTAACGTTGAAgataattagctagctaaaagGAGCAGTAGCTAACGCGTTAGCAGCCTTCAACTCGAAAAAAACACCTATCGAAGAAGCTTTCATTGAGAGAAGACTCATCTAAACGGGGTCGTGGCTGGTGGAACTATCTTCAACATGCTGCTTCACTGATACGCACAGACGGAAGGATCGACAGACAGACCCAGTCAGCGGGTGCAACCCCCTTCTTCCCTGTGTCAGCTGTTTCTCCCACCGGCTACCTCCCCCCTGTACAGAACTTGCTATGGAATGCCCTCACCTAGCGGACCAGCACAGTCCTCTTTAGGACCCTTTCCTGGGAACCCACTCCATAAGGAATCAGCATAGCTGATCTGTCTCAGTAGTCTCTGGATCCTCctaccctccaccctcccctgaGAAGATGTCTGTGAGCCTGGCTGGGGAGGATATCCAGACGGAGGGTGAGAGTGGAAGTAGTGGAGTGCTCCATGATGACTCCAGTAACAGAGGGAAGCTCTCCCCATCCCCCGAGCCCTGCCAGTGGAAAGAGGGCACTGGGACTGGAGGCACTGGGGAGGGCATGGAGGCAGAGGAGAGTGCCACACAGGACTCACAGAGAAGGGCTCAGAACCACGGCCATGGGAGGAAAAGGGCCAGGTCCAATGCCAAGCTGAAGCTGGTGAGGAGCCTGGCGGTGTGTGAGGAGTCATCAGGTCCGTTCTGTACTGACGGACCTCCAGACCAGGACATCATCCAGCTACACATCAGCTGCCCATCagacaaggaggaggagaagtccTCTAAGGATGAGTACGAGAACGAGGAGAAGAACAAGGACAAGACTCCACGCAAGATGCTTTCTCGAGACTCCAGCCAGGAGTACACAGACTCCACCGGCATCGACGTGCACGAGTTCCTGGTCAACacactgaaaaacaaccccagGGATCGAATGATGCTGCTGAAACTAGAACAAGATATCCTGGAGTTCATTAATGACGACGATAACCAGTACAAGAAGTTCCCCCAGATGACATCGTACCACCGCATGCTGCTGCACCGTGTAGCTGCCTATTTTGGCATGGACCACAACGTAGACCAGACTGGCAAGGCCGTCATCATCAACAAGACTGGCAACACACGCATCCCAGATCAAAGGTTCTCCGAGCACATCAAGGATGAAAGGAATTTGGACTTCCAGAAGAAGTTTATCCTCAAGAGAGACGATGTTAGTATGGACAAGGATGATAATCAGATCCGTGTGCCGCTGCAGGATGGGCGGCGCAGCAAGTCaatagaagagagggaggaggagtatCAGAGGGTACGAGACCGGATCTTCGCCCGAGAAGTGTCTCTTCCTTTTCAGTCCTCTCAAAATGGATACATCAACGACAACAGACTTTCCACTGAAGGCTACTCCTCTAGCTCTCAAAAGAGGAGACAGATCTTTAGGGGTAACCGTGAGAGCTCCAGTCGTGCTTCCAGCAGCCGCCAGAGCAGTACGGACAGTGAAATGAAGTGCCTGGAGCCAAGGCCCTGGAGCAGTACAGACTCAGACAGCTCCAATAGGACCCTGCGGCCCCCGGTCACAAAGGCATCCAGCTTCTCTGGCATCTCCATTCTGACCAGAGGAGATAGTCTGGGCAGCAACAAGAGCTCACAGGGTTCCTGCAGGGGCTCACGCACTGGTCTGCCCCTGGTGAGTCCAGATGGGTGTCCTCAGCCCCCGGCCCCCCAGCCTGGCCCCTGCCCTGGGGGTCGCAGCCTGCTGCCCTGCCCCTCCCAACAGGTCCAGACCCAGCCTCCCCAGACCGCCCTGCTGCCCACCCCTCTGCAACACCCCTTGGGCAACCACAACCATAATCACAACCACATGATGGCTCAGCCAGCTCAGCCTGTGTCCTACTCCTCATCCTCCTGTCCCCAGGTTCTGctgcctgtctctcctccccagcAGTACATGgGTGAGGAACTGGCTCCCCAGTTCAGCCAGATGACTCTGAGTAGACAGGGTTCCAGCGAGGCCCCGGAGCCCCCCACTATGTACCAGACCCAGGGGCCCACTGTCCTCACCCAACACCCTCCACCCCAGACTGGCTACATCATGGCCACCACAAGCCAGCCCCTGGCCCCTCCGTCTGGCTACCAGCCTAACACTggacacccccacccccctcctcttccaccacctccctcccagACCGTCATGCAGCCCCCTCCACCGCCACAGGGATACATGCAGACACCTCCCCCGCAACAGATTCATGTGTCGTATTACCCACCAGGGCAGTACCCCAACACGGGGCAGCAGTACCGGCCTGGACCCATGTCTCACCAGGTGTCCTACCCTGCCCATACCCAGCACTCCCAGCCGATACCCCAGCCCACACAGCAGTCAGCAGGTCTCCAGACCATGATGCCCAGCCAGCAGCCCCAGTACCAGGGGATGATAGGAGTACCTCAGCAGCCCCAGAACCAGGCCCTCATCACTTCCCAGAGGCAGGGCATACAAGGACAGATGACAGGGATGATGGTCCAGTACCCACAAATGTCCTCATATCCGGTGCCGGTGGCCAATGAGTCTCAGCAGGTGGTACAGCAGCAGTACCAACAGCAAGTCATGGTGCCAGTCAGCCAGTCTCTCCAGACTGTCCAGGGGGTACAGGGACCCATGCCAGGCCAAGGAATGCCCATATACTACAGCGTCATCACCCCCACACAACAGAACAGCACaagcCCATCAGTGGGGTACCTGCAGCCCAACTCAGAGCAGTACCAGATAAGCCAGTCTCCATCCCCTTGCAACCCTCAGCAGATGCAGCAGCAATATTCAGGAGTGCCACCCCCAGGCCCCGGGGTGATGGTCATGCAGCTTAGCGTCCCCAACGGACCACAGCCTACCCAGAACCCTCCTCTGGTACAGTGGAACCCCTGCAAATACTACAGCCTAGAGCAGAGGCCCAGCAAGCCTGGAGAACTCTACAAACCTGACAACACACAACAGGCCAGTACTCAGATGAGCAGTCCCCTGGCCTCCCCTACCCagtcccccactctctccccctcaggcAGCGTGAGCAGCGTCTGTCCTGGCCTCGGCCCCCTGCCCCTACTGTCACAGTTCCCCCGGCCCGGACCAGGGCCTGCGCAAGGTGATGGGCGCTACTCTCTTTTGGGCCAGCCTCTCCAGTATAGCCTATGTCCCCCTCTCATGCACAGCCAGACCAACTACAGCTCGCATCAGAGCCAAGTAGGAATGAAGCATGGTGCAAGAGGGAAGAGGCAGACACTGAAGTCTCAATCTACAGACCTGGGCACCACTGACGTAGTGGTGAGTCGGGTGCTGGAGGTGACCGATCTCCCGGAGGGCATTAGTCGTCCAGAAGCTGAGAAGCTCTTCAACCAGCTTTCCATGTGTGGTGCCAAAATCCAGTGGCTCAAGGACCCGGTGGCAGGGGGCCATGGAGGTTATGGTGGCCCGGGAGTGCATCACGGCGCTGGGCATTGTCCTGGGGCTGGAGGGGGGAAGGGTGATGGCCCCGGCAGTGACCCAGCTCACCTCTACACGGTGGTGGCTGTGTTCCCCTCCACCATGGCTGCACAGAGTGCTTCTTTTAAACTCAACAACAGTGGGGTCAGCCTCTTCAAACTGAGGGCAGCCAAAAAGAACTATGACCTGAGAGTACTGGAGAGGGCCAGCTCCCAGTGaaaagagaggggggtgaagaaaAATACTTTTGGAAATGAGGAGTGGAAAGGAGTTGGACTGAGGGGACTGGACAAGACGTCACACATTAAAGGGATGGGGTGAACACAGAACACAAATGGAGAGAATGGTGTTTGCAAATGATAaaataattgtttttgtttttgattgttttttaaaatattattGATACCTGAAGAGCACATAAGACACGTGAGCATGTGGATCACTGTTGCCATAAATGGgtgccatcacacacacacacacacacacactcttatgtACAGACAGGCAACAGGATCACGTagcacacacctgaacacactggACAGTTCAACCTCAGTCCATCCTTCCCCTGCTCTCCTCCAgccttcctcctttttctgtctactttctctttcctcctcctcgctctccctcccatCGCTCCGCTCTTAGGCGCACATATTTATGCACAGTCACTCTTTCTATTTTTTTCTATtactctctcttaccctctcgcCACTTGTCTCATACTCTTTcatgctctctttctctgcttacccccactcactcctctctctcctctggcttTCTGTTTGCCTTATACTGCTGTTGTGGGTTCCTGTATTGCGCTATTTTTCTCAGAAGAGTATTGTTCTTTTGCGGTTCGATATATTTATATAAGTGATGTAAGGAATAAATCTATAtattcagtgattttttttttttcttcagtggGTAAGTTTAGGATCCCCTTTATGATACCCTCTCAACCTGTTCCTTCTGCCCCTTTTTCTCCTACCTCACGACTCCAACTTATCCCTTACCCCTCTTACCCCGTTCTATCCTACCCCCACTACCATATCCTCCTCTACCCTTACTCTCCCAACCTACCCCATTGTCCAAATGTACCCTGTGCTCCCCCTACCCTGTTACTTCTTACCCATTTTCCCCCACCCCACTCCCCATAATTACCCATTTCCACTGCCCCACTATCCCTAATTACCCCATATACCCCTACCTTACGACCCCAATTTACCCCATGTGTCCCCCACCCaaactacctctctctcccctacccctcTTAACCCAATATACCCCACAACTTACCTCATTCTCCTGTTGACCCTCTCATCCTCATTGTGCTTGTGTTTTTCAGATGAAATAGTTAAAAGTGCACAATGATTGCATAATGTCTGCTGTAAATtttatttaatgttatttttttgtttgtttttaaaaatataaaagcaaaaaaaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU686300 lncRNA upstream 213 37263766 ~ 37264203 (+) True G602420
TU686260 lncRNA upstream 55495 37208401 ~ 37208921 (+) True G602386
TU686257 lncRNA upstream 57803 37206392 ~ 37206613 (+) True G602383
TU686217 lncRNA upstream 79345 37184792 ~ 37185071 (+) True G602357
TU686212 lncRNA upstream 86100 37177958 ~ 37178316 (+) True G602352
TU686335 lncRNA downstream 3798 37346428 ~ 37346627 (+) True G602455
TU687192 lncRNA downstream 339257 37681887 ~ 37682097 (+) True G603269
TU687275 lncRNA downstream 394094 37736724 ~ 37736960 (+) True G603350
TU687287 lncRNA downstream 401695 37744325 ~ 37744547 (+) True G603362
TU687295 lncRNA downstream 414008 37756638 ~ 37756958 (+) True G603370
XM_036983183.1 mRNA upstream 250362 36955176 ~ 37014054 (+) False arhgap9
XM_036983184.1 mRNA upstream 250362 36955176 ~ 37014054 (+) False arhgap9
XM_036983186.1 mRNA upstream 250362 36955176 ~ 37014054 (+) True arhgap9
XM_021609132.2 mRNA upstream 351404 36907551 ~ 36913012 (+) True LOC110527691
XM_021609130.2 mRNA upstream 367653 36868742 ~ 36896763 (+) True LOC110527690
XM_021609154.2 mRNA downstream 126380 37469010 ~ 37575510 (+) True LOC110527699
XR_005052731.1 mRNA downstream 192434 37535064 ~ 37535117 (+) True LOC118965405
XM_036983194.1 mRNA downstream 620258 37962888 ~ 37999638 (+) False LOC110527703
XM_036983192.1 mRNA downstream 627512 37970142 ~ 37999638 (+) False LOC110527703
XM_036983193.1 mRNA downstream 630979 37973609 ~ 37999638 (+) False LOC110527703
TU686155 other upstream 173660 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 688344 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 2293011 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 2504758 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 3297661 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 1156401 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 1241844 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 2783904 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 2863939 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 2880545 40223175 ~ 40224171 (+) True G606464

Expression Profile