RNA id: XM_021609154.2


Basic Information

Item Value
RNA id XM_021609154.2
length 2265
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110527699
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37469010 ~ 37575510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagcgcgcaaaCAAACCAACGACATTTTCTCAGCAACCTCTCTAGCTTTGAGTGGAACAGAAGATGCTCTCGTGATCTTCACTCTCGTAGCCTATGCGTTCTCTTCTTGCGAAGGTGACTTTGCCTCTGCGCGCAAACTTCCCGACTTCCGTCAGCATCCATCCTTCTAAACTATGGATATGCATCACACTAACGAAACGGACCGGAGAAGCTAAGCCTGCAACTAGTTGTTCGTGTCGAAAACACTGTAAAATAGACTGATAAATACCGAAACTGCTAATATcgaaacttttttttatttttttgtgtgtgcgcTCCCtgcctgctgttgctgctgtgtgTATGTTAACCCAAGGAGGCTCGTAGTGTCAGGGTGGTCCGCAACGGAAGGTGTGCTGCGATGAAGGTACTCGGTTGGACCATTGTGATCCTCTCCCAGTGGATTTTACGAAAGgcgCAGGGACTGGAGAAGCAGGTGGCCAAGGGCTACCCTGGACTAGACCTGGGTCCAGCAGGCTCAGTGATGAAGACCCTACCGTATGGCATGGGAGAGGGAGCCGTCGGCACCGGCGGAGGGGCTACAGGGGGAGTCAAACCCCCATACCAAACCACCTCCCGCATCTTCTCCACCGGCATGGACGGGGTCGGCAACCCGCCCATGAAGCCTCCTCTGAAAACCCCCACCTACAGCTTTTTTAACCCCTACGACTGGGCTCGTAATCAGTCGCTCCTACTCGACCAGACAGGCTACCGCAACAAACGCAAACCCTCACTTAAGACGGCCCAGAAGACCAAGAAGATCTTTGGCTGGGGGGATTTCTACTTCAACGTGAAGACCATGAAGTTCAGCCTCTTGGTCACGGGGAAGATCGTGGACCACATCAACGGCACGTTCACCGTCTACTTCCGCCACAACTCGTCCAGTCTCGGTAACGTCTCTGTCAGTATTGTCCCTCCCACCAAGGTGGTGGAGTTCGAGGTGTTGCAGCACCATCAACCAGGCCTCCACGCTCAGCTCCACCCAGAGCTCACCCAGATCACCCAACAACAGACCCCGCACCAGTCCACCATCGACCCCAAAGAGATAAAGACCTTCAACTGCCGGGTGGAGTACGAGAAGACCAACCGTTCCAAGAAGCCCAAGCCCTGCCTCTACGACCCCTCCCAGACCTGCTTCTCAGAGCACACTCAGTCCCATGCCGCCTGGCTCTGCGCCAAACCATTTAAAGTCATCTGCATCTTCATCTCCTTCTTCAGTATCGATTATAAGCTTGTGCAGAAAGTGTGTCCAGACTACAACTTCCAGAGTGATCATCCTTACCTTGGataagagaggagggatgaggagaggggaggggaggggagagaatcTTAAGCGCGTTTGAGGGGATCAGTTTGAGAAAGGCTCCAGACGCAGAATGGCCAATATTGATCAGAGAATGTGTAGTTATTtgggatgcaaggtgatttgtagatcagggATCCCATGAAGTCCGACTCCAATGTATTGTAGTCGATCTCAAACACTCACAATGACAGGACTGATGACCACAGGGATGGTATTTTTCTGCTCTCAACCTCCTGTTGGATTGTGGATATTATTAATGAGAAGTACGGCTTGTCGGCGTCATGGATGACATACATTATATGGCAGATTTTTCAAAATGACCTAAAAACCCTTGTATTAGTTGACTTTAATTTCTATGTaaataatgttttaaaaaatctatACAGCTCTGCTCTTTAGACATTGGTTATCAATTTTAAATCATTTCTGTCTGTTCGATTTAAACTTTCAAAACAAGCTGGGAAGTATGGACGTTTGATTTTGATGATGTCATATTCTATCTGATGATCTGAATGTGTCATGCTGTCCCTATTATACTATCATGCAGTCCAGAGTCTTGGAACCCGGAACCAAATCTTGCGTGTGCAACAGTCTGCCGCAAGAGACTAGACCTTGTATGGATTTATAGGTTCTAGAAGACTGTTATGTTTTCATTCAAACTTTTCAAATCCTGGATTCAAGAGAATATATAGTCCTGGAGTTATATGTATGAGAAATGATATGCTGGATATGCATACAATATATGAGCAAAGCACATTAAAATGATCTGTTTCAAGTCATTGAATAATGGTCAACATACTGGGATTTATTTTCACATTAAATATTTTACGTTCACTGAACACATTTATTAGGCATTGTATGAGTCAAGAGCATTGTACGAGGCATTATCTAAAAAATAAAGGAATCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU686335 lncRNA upstream 122383 37346428 ~ 37346627 (+) True G602455
TU686300 lncRNA upstream 204807 37263766 ~ 37264203 (+) True G602420
TU686260 lncRNA upstream 260089 37208401 ~ 37208921 (+) True G602386
TU686257 lncRNA upstream 262397 37206392 ~ 37206613 (+) True G602383
TU686217 lncRNA upstream 283939 37184792 ~ 37185071 (+) True G602357
TU687192 lncRNA downstream 106377 37681887 ~ 37682097 (+) True G603269
TU687275 lncRNA downstream 161214 37736724 ~ 37736960 (+) True G603350
TU687287 lncRNA downstream 168815 37744325 ~ 37744547 (+) True G603362
TU687295 lncRNA downstream 181128 37756638 ~ 37756958 (+) True G603370
TU687296 lncRNA downstream 182643 37758153 ~ 37758358 (+) True G603371
XM_021609142.2 mRNA upstream 126380 37264393 ~ 37342630 (+) False LOC110527697
XM_021609145.2 mRNA upstream 126380 37264393 ~ 37342630 (+) False LOC110527697
XM_021609140.2 mRNA upstream 126380 37264416 ~ 37342630 (+) False LOC110527697
XM_021609141.2 mRNA upstream 126380 37264416 ~ 37342630 (+) False LOC110527697
XM_021609146.2 mRNA upstream 126380 37264416 ~ 37342630 (+) False LOC110527697
XM_036983194.1 mRNA downstream 387378 37962888 ~ 37999638 (+) False LOC110527703
XM_036983192.1 mRNA downstream 394632 37970142 ~ 37999638 (+) False LOC110527703
XM_036983193.1 mRNA downstream 398099 37973609 ~ 37999638 (+) False LOC110527703
XM_021609158.2 mRNA downstream 460486 38035996 ~ 38040937 (+) True LOC110527704
XM_036984429.1 mRNA downstream 552870 38128380 ~ 38160898 (+) True LOC110527708
TU686155 other upstream 378254 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 892938 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 2497605 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 2709352 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 3502255 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 923521 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 1008964 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 2551024 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 2631059 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 2647665 40223175 ~ 40224171 (+) True G606464

Expression Profile