RNA id: XM_036983188.1


Basic Information

Item Value
RNA id XM_036983188.1
length 2181
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110527701
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37756561 ~ 37789849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTATTATTACAGCGCTCACCTACATGCGGGCTCGTTATTGGTGGAGCCATATCTGTGTCCTATTGGCTCTTCCACCCACACCGTAATCAGAAGCGCGAGATGGACAGAAGTTGAGATTACATTTTATGAGCGTCCTCAACAAACGTtagttttatttttaattaatcaGCTTTACAGTCCGTGCTTTGTTTGTAGTTTGAGAGACATGTTTGTGTGTCGAGGAGCGAGGCTGTCGGCGAAGGCTTTGGAGCAGGGTTTCAACTCCACGACAGGGGCACAATTTAAAACGAACAGACTAACGGTAGTTGACGTTACCTGCACTTTGCCATTACGTAACATCCATGCATTCAAATGCTCCCGAGCTTTTTGTGGATATTTTGTGGCACTTTCGCCTGATGGAAAGCGAGAAAAAAGGGAGAAGGATATGTTTTCCGTGAAGAACCGGGACTCTGTTCGTTTCATAATCACGCATCAGCAACAATTAACTCGAGTAAATTCGTTTTCTTTAAATCTCTCCAACAAAAGTAATGGTAAAAGCTTATTCAACCGTACACATAATGTCACTAGCTCAACTCTTTATCGGACGAATGGAGGCCAAAGCTGGCAGAAGAAACAATACGTAGATGCACTTGAATCTGTGTTTACGTCTGGCGCCAATGTCTGCAATCATCGATTATATCCCACAATGACTGTGCAAATGAGACCTTTTTCCTCTGTTGCTGTTGCTCCCAAACTGGTGGAGGACTCGCCCGCAGATCACGAAGTGatgaacgtggtgtcttcaggcatttggaaattgctcccaaggatgaaccaaacttctggaggtctacaatttcccatgatgtcaagcaaagaggctctgagtttgaagataggccttgaaatacatccacagGACCAGACTCCAAAGCAGGCCTCATCCAAAGGCCCTGAGGAACCCGAGGTACCGGAGGACAATCCTAGCAAGACCCAGCAGCTGAAGAAGATCTTTAAGGAGTACGGAGCTGTAGGAGTCTCCTTCCACATATGTATGTCCCTCATGTCTCTGGGCATGTTCTACCTCGCTGTGTCCAGTGGGATCGACATGGCTGCTATCCTGTACAAGATAGGATTCAGTGAATCTCTGGTTCAGTCCAAGTTGGCGGCGGGTACCAGTACGTTTGTCCTGGCGTACGCCATCCACAAGCTGTTTGCTCCGCTCCGTATCAGCATCACTGTGATATCAGTGCCTCTTCTTGTACGATACCTCAGAAAGAGTGGCCTCTTCAAGACACCCAACTCACCTACACACTGAGTGGCTGAGACCCCAACCTCCACTAACTTCGATAACTGAGACTTTCCAAATATGACCATTACCATTTCTGGAATCAAGAGGGAATAAGTGTGACAAATTCTTCCAACCATCCCTAGTTTTTCAACTGGAATTTCTGCAGGAGATAAAAACAGATCCAACCGAGGCTGACTTTTAACCCACCTGTAGATCAGTGGCGGTctgtgccgtttaagatgagcgAGGatgattttaaaaatgtatttcttatgagcatggccttatttctattgcagcattttggatgactgtcattcatatttcattcacccagttcaatataACAGTGATGGGTTAAGGCTACTACAATAAGGCTACTTACTACAATCCATCATGAGATTACTACAACCTATCTTATGAGAAGTTTACATTGTGAACTTTCATCAAGATCATTTTTAGTAATCAAGGTGAGACTgtaacacattcaatactgccgtGAACTCTcgtgcctgcatctagctgatctaggttgTAATCATTAGtcaaacagttgcaaacgagagtttctattcgacaaattcaggtatgtttatccccattccatttaagaaatgtttttcaacagaatcggtggaatgaatacacccctgatcaaaCGCTAACAcaattcactttcatagcagccatatAAAAACGGCAAGATCACTTTGCTCATTGTATACTATGAATTCggaaagttttcacaccccttgaccttttcctcattttgttacgttacagccttctaaaATGGACAAATTGTTTtttgcctcatcaatctacacacactatgccataatgacaaagcaaaagcaggtttttagatttttttgcaaatgtattaaaaataaaaaactgatcacattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687662 lncRNA downstream 2421 37753725 ~ 37754140 (-) True G603713
TU687663 lncRNA downstream 2884 37753406 ~ 37753677 (-) True G603714
TU687282 lncRNA downstream 14768 37741541 ~ 37741793 (-) True G603357
TU687272 lncRNA downstream 22266 37734083 ~ 37734295 (-) True G603347
TU687263 lncRNA downstream 28213 37728052 ~ 37728348 (-) True G603338
TU687703 lncRNA upstream 66669 37856518 ~ 37913536 (-) True G603752
TU687792 lncRNA upstream 202510 37992359 ~ 38002257 (-) True G603836
TU687813 lncRNA upstream 274730 38064579 ~ 38065697 (-) False LOC110527705
TU687814 lncRNA upstream 274730 38064579 ~ 38070347 (-) True LOC110527705
TU687891 lncRNA upstream 300991 38090840 ~ 38091169 (-) True G603931
XR_002474154.2 mRNA downstream 42415 37710179 ~ 37714146 (-) False LOC110527700
XM_021609137.2 mRNA downstream 508106 37239565 ~ 37248455 (-) True LOC110527696
XM_021609135.2 mRNA downstream 547609 37087748 ~ 37208952 (-) True gli1
XM_021609136.2 mRNA downstream 638327 37087748 ~ 37118234 (-) False gli1
XM_021609134.2 mRNA downstream 717752 37031274 ~ 37038809 (-) True LOC110527694
XM_021609156.2 mRNA upstream 13965 37803814 ~ 37932459 (-) True LOC110527702
XR_005052706.1 mRNA upstream 145522 37935371 ~ 37936376 (-) True LOC118965380
XM_036983195.1 mRNA upstream 273440 38063289 ~ 38077146 (-) False LOC110527705
XM_021609159.2 mRNA upstream 273440 38063289 ~ 38079634 (-) False LOC110527705
XR_005052575.1 mRNA upstream 303354 38093203 ~ 38096522 (-) False LOC110527706
TU684989 other downstream 1995291 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 2701333 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 2701428 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 2789775 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 3141686 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 799306 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 799568 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 801019 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 812481 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 1273156 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile