RNA id: XM_021609156.2


Basic Information

Item Value
RNA id XM_021609156.2
length 3342
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110527702
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37803814 ~ 37932459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCTGCCCAGCCACGGTGGCTTTTCTTCTGTGTCGCTACTAGTTAGCCACAAGACGCTAAACGTTGCTGCAGGCTTATCCCAGTGAGTGAAATTGGAACTAATGAAAACCAAGTAACAGTCGcgGGTGGTCTAGTCACAACTGTCctggtggtgaggatgatgatgatgggagTTGGCTACTACAGCCAAATGTGCAGCCCCCCACGCTAGTACCAGTCTACAACCCCTGGTCCCCCTTTGAGCCCTGGTCCCACCTGTCCCCACCATGGCCAACCACCTGGAGCTTCTGAATGAACTGCAGCAGCTGGATAAGGTGCCTAGCCTGGAGCGACTAAGGGCCGCCCAGAAGCGCCGCACGCAGCAGCTGAAGAGATGGGCAGtctatgagaaggagatgcaGAACAAGAAGCGCAAGGCGGACAAGAGGAGGAACACCAATCATGCCGCAGCCATGGAGGCCAAACGACATGTATCGTTTGCAGCTAATGTGGCACTATTAGAGGCCTCGGCACGGAACGACCCTGACGAAGtaCGTTACCTGCTGAAGAACAATGTCAGTCCAGACTTGTGCAACGAGGATGGACTCACTGCCCTACACCAGtgcTGTATTGATAACTATGAGGAGATGGTAAAGATCCTGTTGAATCGTAGTGCCAGTGTAAACGCCCAGGACAATGAACTTTGGACCCCGCTACATGCTGCTGCCACCTGTGGACATGCAGGACTGGTCAAGGTCCTCATACAACATGGAGCAGACCTGTTAGCTGTGAACTCTGACGGCAACATGCCCTATGACCTGTGTGAAGATGACCCTACCCTGGACATCATCGAGACCGCAATGGCAAATCGAGGCATCACCCAGGAGATGATCAACGAGACCCGGGCGTCTGTAGAgaggagaatgatgggagatatCCAGGAGCTGCTGACTGCGGGAGAGGACGTCAACCGCCACGACTCACAAGGAGCTACTCTGCTCCACATTGCAGCAGCTAATGGCTACGTCCAGGGTGCAGAGCTGCTGCTGGAGGGAGGGGCCAGGATGGACCTGAGAGACACTGACGGATGGCAGCCGCTCCACGCCGCAGCCTGCTGGGGTCAGATGCATGTAGCAGAGCTGTTGGTTTCTCACGGTGCCAGTCTCAATGCCAAGACCTACCTAGAGGAGACACCCATTGACCTGTGCGAGGACGAGGAGTTCCGTGCCATCCTGTTGGACCTGAAACACAAACACGATATTATCATGAAGTCTCAGCTCAAACACAAGACCTCCCTGTGTAGGAGGACGTCCAGCGCAGGCAGCCGTGGAAAAGTGGTGCGGCGGGCCAGCTTGTCTGACAGACACAACCTTCGTGTGAAGGAATATGAGACCGAGGCCATCGTgtggagaggtgggagggaaggagggagggaggagcaggagaaagagaaggaggcaGACCAGGAGAACAGCCATCTGATCAATACGACTGTTACTATGGTGATTCCGGTGAAGCCAGCAGCGGAGAGGCCCAAGCTCCAGAAAATCCTTAAAGATCCTAGTGGCATCATCAAACAAAACGGCATCATCTCCACGACGACGTCTACGCCCGCTCCCAGTCAGTCGCCGGCCACCAATGGTGAGGCTCCATCCCCTGACACGAAGAGTATGGCGTCCATTCCGCTGCCCGAGGACTCTTCCTCCTTGCCCAGGGAGCGTGCTCAGACACTATCAGAACTTAAAAAGCAGAGGTCGGCCGCCAAGCTGCTCAACCACCCTCTCCTCAACGGTCACCTTGGAAACGGCTCCACAGAAACCGCCGAGCCCCAGAGCCCTGTGGACTCCCGCATGCCGCTGGTCTCCTCCAATGGCAGCGCAGTTTACTACACCCCGGCCAGCGGGGACCCACCCATCCTCAAACTGAAACAGCCAATAGATGATGAGGAACTAAAGGGGCACAGCTGCTGCTGTGTCTCCTAGGGAGGGGTGGAGGTCACCCCAAGACACTGAtttaaggtcaggtttactaTGTTCTCCTCCAGtgcattaaggttagggttcgagGAGGGTAAACTGACCGTAGATCTGTGTAAAAGGGTAACTTCTTCCCGGATAGAGTGTACCAGAGCAGGATGGTCATGTGACTGAAGCAGGAAGAGATTGCACAGCGGGACACCAAAATGCAGAGCCAAGGTCCAAGAATGCAATAGGAGTGGAGCTGGTTCAGCCAGGTGATTGGTTACCTGCCCCTACTCCCTAGTTTTCCTACCCACTGCTGTTTCAACTCCTGGCCACACCAGTATGGAGGATAGGATAACCTTAGAGAAATCGAGTAAAAGATGACTTGGGGAAGAGCCAAACGGTGATAGCTTGTGGTCGATTGACAGGGCAGGTATGTGGTGGACACTGTTGATCTCCCTATGGAGTGGGTGGCTGAGATGGTCCATAGACCTTAAGAGTATGGAGGATTCCCCTACCCCCCCGGAGAACGGGCATGCCACTGTGATAGATTGTGGTTGATGTAGAGGGTAAGGAAGTGGAACGAGATGGCCCTTATCCCCTATGAGGAGAGAACTCTGGTGCCCTATAAAGGGATGGATGCCGAGGCAGCGTGCTCTCCCATGTTAAGCGTATGTGGTGTCTTACTTTTGACTGAATCACTGTTTTCAAACCACATTCTTACTTTATCCACTGTTTCTGAAATTTCTTTGAGGAAAAAATACTCCAACATATCAGAatactctctctgtgtttttactGAAACAAAGAGGGATACTCTTTCTTAAGACGTATTCTTGTTCAAATGCTGACTATTTCAGAAAAGGGAAGGAATGGTCTATaccagggtggcaggtagcctagcggctagcgcgttggaccagtaactgaaaggctgctggtttgaatccccgagccaacaaggtgaaaaaaatctgtcgatgtgcccttgagcaaagcacttaaccctaattgcccctgtaagttgctctggataaaagcatcttctacatgactaaaatgtaaataacaaAACAGAACAGTATTACAGTCAACGATCTATCTGCTCCTGTGAAGAAGGAGGATTGGAGCACTGCACTATAGACATTTGAAACAATGCAGCATTAAACTCATCATCCGTCCTGATCCGAACTTGCATCGATAAAGGTGGTAAAACGGTGTTTGATATGCCCATGTCTTTTTGCTTATTTGTAGGTAATTTAAGCAAAAATAATTGCTTGAAAATACAGTgcatacggaaagtattcagtccccttgactttttccacattttgttacgttacagacttattataaaatgtattaagtaaatgaaaaatcctcatcaatctacacacaata

Function

GO: NA

KEGG:

id description
K17459 PPP1R16B, TIMAP; protein phosphatase 1 regulatory inhibitor subunit 16B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687661 lncRNA downstream 46720 37756651 ~ 37757094 (-) True LOC110527701
TU687662 lncRNA downstream 49674 37753725 ~ 37754140 (-) True G603713
TU687663 lncRNA downstream 50137 37753406 ~ 37753677 (-) True G603714
TU687282 lncRNA downstream 62021 37741541 ~ 37741793 (-) True G603357
TU687272 lncRNA downstream 69519 37734083 ~ 37734295 (-) True G603347
TU687792 lncRNA upstream 59900 37992359 ~ 38002257 (-) True G603836
TU687813 lncRNA upstream 132120 38064579 ~ 38065697 (-) False LOC110527705
TU687814 lncRNA upstream 132120 38064579 ~ 38070347 (-) True LOC110527705
TU687891 lncRNA upstream 158381 38090840 ~ 38091169 (-) True G603931
TU687892 lncRNA upstream 158928 38091387 ~ 38091667 (-) True G603932
XM_036983188.1 mRNA downstream 13965 37756561 ~ 37789849 (-) False LOC110527701
XM_036983190.1 mRNA downstream 13971 37756561 ~ 37789843 (-) False LOC110527701
XM_036983189.1 mRNA downstream 13974 37756561 ~ 37789840 (-) False LOC110527701
XR_002474154.2 mRNA downstream 89668 37710179 ~ 37714146 (-) False LOC110527700
XM_021609137.2 mRNA downstream 555359 37239565 ~ 37248455 (-) True LOC110527696
XR_005052706.1 mRNA upstream 2912 37935371 ~ 37936376 (-) True LOC118965380
XM_036983195.1 mRNA upstream 130830 38063289 ~ 38077146 (-) False LOC110527705
XM_021609159.2 mRNA upstream 130830 38063289 ~ 38079634 (-) False LOC110527705
XR_005052575.1 mRNA upstream 160744 38093203 ~ 38096522 (-) False LOC110527706
XM_036983198.1 mRNA upstream 237724 38170183 ~ 38198779 (-) False LOC110527710
TU684989 other downstream 2042544 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 2748586 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 2748681 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 2837028 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 3188939 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 656696 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 656958 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 658409 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 669871 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 1130546 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile