RNA id: XM_036983193.1


Basic Information

Item Value
RNA id XM_036983193.1
length 3613
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110527703
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37950666 ~ 38002305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGTGGAGGCGTAGCCACCATCGCTAACACATTCCTCTTTCAGTCACCCCACATACCTCTAACTCTACATGCACTTGGCCAGCAAAAGCCCTGGAGCATTGACCAATTTTTGATTTGAGCGGAAACTGAAGATGGATTGCTATCCTATTCGAAGACTGGTAAAAGCCAGTTGATTCTGCTGTTGGAGACATTTGTTGAGTGGGAGGACATGGGAGGCAGAAAGGAAGTAGTGAGCAGGCTCGCTCCTATGTCCAACTCTTCCAGGCAGTTTCTACGTCACACGCCGCTAAACAGACTCAGGCTCCGACTGACCCACAGCCCCCTCAGTAGTTTGCGATCCAAATCAAGCTCCCAAGCTACCAACAGGAGCCCCAGTCCCTCCGAGATGAACGGTAAGCCTTGGGCCAGGCCAAGCTACCAGGACCAAGCTGCAGCTGAACACACACAGGACAAATGTACAGCGTCCCACCAggaaccacaacaacagcaccctGACAAACTGTGCCTGGACTCCTTCTGGAGTGAGGTGGAGACCATACGCAGCCAAGATAGCGGTTACATTGACCTTGACACTGACAGCGCCAGTCGAGACTCCAGACACTCTGAAGagggagagcaagaggagCAGTGGCTCCAGGATGCAGGTCTGTCCACTCTGATaagacagcagcagcagagaccagacagagacagagaccgggaACAGGACAGGGAAGACCAGGATGTTGACCAGGCCATCCTACTGTCCACTCTGACCCGTACGCAGGCCGCAGCCGTCCAGAGGAGGCTCGATTCCTACACCCTGTCCCTGAGGAAGAGGAGCAAACCCCCGCCGCGCGACGTCAGGGACGTCTTTAGCTCATCACCCTCCTCCATTGCTCAGACGCCTCTACCAAAGTTTCAAGACCCTGACCCTATAGAACCTAGCGCATCTATATCATCTATACCAGAGGACAGCATGGAGACTATCACCAAGACCCTACGACAAGAGGTCAGCttggagcagcagcatggagGAGATCCTAAAGAGGATGTCTTCATCACAGAAGTTGCATACTGTGAACAGGCGGCCATCTTGTTGAAACAGGCCATGCTGCCACAGATACAGAACAACGGCCGGAAGAGGAAGGAGGACGGCACACTGCCTAGGATGACCTGCCCTCAGTGTCGTCTGGGTGTGACTCGTATCCATGACCTGTCCAATCAGGACATGAAGAAAGTTCGTCAGCTGGCCCTCATCGAAATGACAGCGCTCTGCGACCTGCTGGAGCTCGACGTGAAGAGACACAAAATCTGCAAGAGGAAGATACTAGAGAGCGCCTTGTATGGGGTCCCCTTGGCCATGCTGTTGGAGAATGATCAGAAAATCAATCCCACTGCCACCACTCCTCTCATCCTGCAGGCGcTGCTCTCTTTCCTGGAGAAGAGCGGAGTAGACTCAGAAGGCATCCTGCGGGTTCCAGGCTCTCAGTCCAGAATCAAGaaGTTGCAGCAGGATCTGGAGCAGAACTTCTATAGTGGAGGATTCAGTTGGGAAGAGGTCAGCCCCAACGATGCTGCAGCGCTAGTGAAGAAGTTTATTCGAGAGCTGCCTTCTCCACTGCTCACCACAGAGCACCTCAACGCGTTCAGCGCTGTCAGGGACATCCCTGAGCTGAAACAGAAGCTACATGTTCTGAACCTTCTCATTCTTCTTCTGCCTGAACCCAACAGAAACACACTAAAGGCTCTGTTGGAGTTTCTGAGTAAGGTGGTgtccagagagaggaggaaccGTATGAACCTGTGGGCTGTGTCCACCATCATGGCCCCTAACCTGTTCCTCCACAAAGCCGTGCCCTCCCGCCTCACTGACGGGGGGCCAGGGGTGGAGAAGGGACAGGCCGAGAAGGCTGCTGACATCATGAGGCTCCTCATACGCTACCAGGACTTGCTCTGGACCATCCCCAACTTCCTGATGAGCCAGGTGCGAAAACTGAATGAGAACCGTAACCGGAGGTACCAGTTCTACGACCGACGCATCAAGAACCTGCTGAGGAAAATACACCAAGACAGCAAGGACAAACCTGACAAGAACTCATCAGAGCCGTGTCGTACAGTGAAGATCCAGGTGGGAGATCTGATGAGCAGCACCATGGAGGTGCAGGTTAACATCAGCTCTAGGGCTTCAGACCTGCTGGCTCAGTTCCACAGGCACCTCTGCAGCTCTGACAACACCAagagGAACGGTTCGGTATCCCACCCAGACTGTGCCATCTATGAAGTGGGAGGAAATATCGGTGAACACTGCCTAGACCCAGAGACCCATCTCCTGGACCTGTACAACACCAACCCCAGTGGGGAATGGGTCATCAAACTGAAACCACTGGTCACCACCAGGGGGCTGCACCAATAAGAGACAGCCGCAGGCAAAGGGAGAGACCAGTAGGGATCTTCAAGAGCCagccagaggaggagagagaccaggaggaggaagttgctgctgctgttaaaaAAACAAACCACCTCAATATTGAGCCCTCTCATTGagccttctctccccctttcctctgctCAATGCAGGGGAGGCCAGACTAGGAGGTgcaaagcagagagagacagagagggggagctaCTGCTCAAAAACACTCCACCTCCACACCTTCAGATGGAAGAGAGGCTGAGGCTTCTTCTTGGCTTGGCAGCTCTCAGCCAATCACCTCCCAGCATCCGCAGGAACCCAGATGGGGATCTGATGCACCGCTGCTTACAACAGCAGCCACAgagtctctctcactccctctctctcactctctctttctttttgctAGCTCTCCATTCCTTCTTCTCAGACATTTGATCACAAAAGGAATGGGAGTggaacatgtacagtatatctgttttCCTTTTTTGTCTCTTTCACAGAGGGACAGTCAGAGACTCTAATGAGCTGATAGCCCCATGTCCTGTCCCTTCTGTATGACTTTGGCTCTGTTCTTTCTGGGGCCTTTGGGCCCTGTCCCTGTAGACTCTCAATAAGAGCCCTAATCAGAGCAGAGGACAGAGATCCTTCTTCTCTTTAAGGGGTCAAAGGTCAGCCTTTAGGACATTACTACTGGACCCCATAAAGGGAACCGTTGTTTAATAACAGAGAGTGAAGCTGGACTTCGTTTCTGTTTTCTCATTTTTGTTTTTGATGAATGAAGGATTTTAAGTATTGAATCTGGCGATGGATTGATTGACTATTTATAATTGATTGGATGTGTCTATCTGTATGTACGTGTATGTAGTCATGAATGTTGTCCTTTGAAATGAATAGGTATGTTTGTTGCTGAAATAGTTAGTAACATAAGTCATGTGAGCTCATCCAGTCTTTTTGGGGGCTTTTTACAGTGTTATTGCTCTTATACAGTACCTTGGTTGATGAGTTGTATTTTGATGCACTTCTGCATCCCTCTTTTTCTATTTCTATTACCCATTTGTCATCCGTTCCTCTTTAAAATACATGtcatacagttccagtcaaaagtttggacacgcctactcaagtgttaaacaaatcaaaatatattttatatttgagattcttcagactgttggaaaagcattccaggttaagctggttgagagaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687391 lncRNA upstream 39231 37931994 ~ 37934378 (+) True G603463
TU687296 lncRNA upstream 215251 37758153 ~ 37758358 (+) True G603371
TU687295 lncRNA upstream 216651 37756638 ~ 37756958 (+) True G603370
TU687287 lncRNA upstream 229062 37744325 ~ 37744547 (+) True G603362
TU687275 lncRNA upstream 236649 37736724 ~ 37736960 (+) True G603350
TU687530 lncRNA downstream 99122 38098760 ~ 38099254 (+) True G603599
TU687538 lncRNA downstream 106316 38105954 ~ 38106164 (+) True G603607
TU687559 lncRNA downstream 129145 38128783 ~ 38129063 (+) True G603626
TU687563 lncRNA downstream 133544 38133182 ~ 38133404 (+) True G603630
TU687572 lncRNA downstream 138441 38138079 ~ 38138393 (+) True G603634
XM_021609154.2 mRNA upstream 398099 37469010 ~ 37575510 (+) True LOC110527699
XR_005052731.1 mRNA upstream 438492 37535064 ~ 37535117 (+) True LOC118965405
XM_021609150.2 mRNA upstream 630979 37264416 ~ 37342630 (+) False LOC110527697
XM_021609158.2 mRNA downstream 36358 38035996 ~ 38040937 (+) True LOC110527704
XM_036984429.1 mRNA downstream 128742 38128380 ~ 38160898 (+) True LOC110527708
XM_021609163.2 mRNA downstream 162977 38162615 ~ 38170254 (+) True LOC110527709
XR_005052577.1 mRNA downstream 260741 38260379 ~ 38267346 (+) False LOC110527711
XR_005052576.1 mRNA downstream 260742 38260380 ~ 38267346 (+) False LOC110527711
TU686155 other upstream 882853 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 1397537 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 3002204 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 3213951 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 4006854 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 499393 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 584836 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 2126896 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 2206931 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 2223537 40223175 ~ 40224171 (+) True G606464

Expression Profile