RNA id: XR_005052575.1


Basic Information

Item Value
RNA id XR_005052575.1
length 2643
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110527706
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38093203 ~ 38096522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAGACgctcagctctgtctctctctgtctctctctcgctccctcccacCGCCTCGTTTCCCTGAGAGCCGTGTTTTGCATCTCTCCCTAATTTGCATTTCTTCTTTAGATTTTCCGTGCGACGGTCTAGCCGCTCGAAATCATAGAATAAGGCGTAGCACCGCAGCAATATCTACATGCTCCCGGCATTTCCAAAGCAATACGCACGGCGGAACCCATTGGAAAATTTGAATAATGTTGCCGAAGCTTTCCGGAAGGTGAAATTGAGGAATATATTTGGATCAATCCGTTTGGTTGCGCACTAGAGGAGACACATGCCTTCGAGGTAAACAGACAGCAGGACTGGACAGCCAGATAGTAGCCTAGGTTATATCGTTTTTCTCCCGCGTTATAAGCGGTTACAGGCTGTTATAACGCCACGGTAGTGGTCCTAAGGTCGAGCAGAGCGTCATATTTTGGTTTGTGCACCTTGGTTGGTTATTGAGACGCAGTTGGAAATGTCGGAAGTACTACAAGACGAAATGAGTCATTATGGAAATGAGGACGATGAGGGACACCTTTCCTTCACCTGTCGCCTCCAAGACACCAACAACTTCTTCAGCGGCTCGCAGGGGGGCAAACGCCCGCCCAAACTTGGACAGATAGGCAGAAGCAAACGAGTCGTCGAGGATGAGAGCGGCGTTGACGAGGCGCAGAAAAACGGGACAGAGAAAACACAGACGGAGGCTTAAACACAccacccccgcccccccccccccccccccgaaagaCATTGATTCTCATTTTCTATTCGAAATCAACAGTTTTAATCCAAAGACACTGTATATAAGCACTTTCATCCCATATGGCAGCAAGCACTTCTAGACCCTCTCCCAGTCCTCATGATGGTGATCTCCTGGGACTTATACTGGCAGGATGGGGAAGCAGCCAAGacaagagatggagatggagacgaACACGGAGACCGAGACGGTGATGGATACAGACGCCCAGGTGAATGCTGTCATGCCAGGGTTTATGCCCATAGAGCTTGTCTAAAACGGGGGATGACCAGCCTTCTACCCAGAGAGCTACTGGGTGAGCAGCAGGCTTTTGCTTCAGCCCTACACATTTTACACTAGTCAATTATTGGTCGTATATAACTCCTAAGCAGGTTGACCAACAAATGTAGCAGTCTGAAAACTGTCTTTTCATGGTCCTGGGTAGCAGCTAATTCGTAGCATTAGGTGTATTAGAGTAGGGATGGATCAAAACCCTGCCGGAGGGGGATAGCTATCAAGGAGGAGGGTCTAAACCATGTGACCAGGAGAGGATGCTGATGGAGGAAGACAATGCTGTCGAACAAACGCAGAAATCAGGGAACAAACTATAGAAATTATCTTATAAactaaagcacacacacacactcttatatCAATCAAACCACATGATATTACATTACCATTCTTTCTGCTCTTGATTCTTCTGATGACGAGTgcaaacaaataaataatataaataacttgtaaataagaaatggtgcagatgtaggatcttaatttgatcaccctgttgcagtaaaacttgtagtgtatgtgaggtttaaaaaggcatcTGAAGTtagtcatttccactttgaaatttcaggcATGATTTCCCTTATGAGAAATGCATCAAACCCtacaaatgtccattaattatgatccacataataattcacatttcctgttgctgcaagattattttcctgctgtagcaaactggctcaaattaagatccctaCATCTGCAGCCCCACGTTCtgttagcctgggtgccagtcggTTTCTGCTCTCTTGTCAACTCCTTGTGGAATTGTCATTTTTGGCGTGACAATTGGTCGTGATATGGACCTGGCAAGATGGCAtgaacagatctgagaccaggctaacgTTTTGTTGCACAGCGGAGAAAATAAGCAGTGAAATGGTTTGTTGTAATCTAACGTAATGTGTCTGTATAAAGAGACCTTATTTATTAAGCCTTTGGAGAAGTTTTTTGCAGTGCTCAAGGCCTGACTGAGGGACAGTTTTGTATGTAGAGAATTATGATGACAGAATTAATGAAGTGATCTTTTCCTTTTTTTACTTCTTATAAATTTTGATGTCGCCTGATCAGTTTTTGTTACCATCCTTTGCATCTATAGAGTCATGTATACAcattatacagtactgtacatcacTGGTTTGTAAGGCACCAAAAGGCCTAAAGTCTGGATTGTTAAATATAACTGTACACACTCCCTATTTATTAACTATTTCTATTGCATTGCGCATTATCACGTGTGCCAAATATCAGGAGGGATAACCAGACAACATGGTTGCTTATGTTGTGCTTTCTATACGTTTAATTGTAACAATTTTGTTATTCTTCTGTTGTTGCCATTGTTCAGGGCTTTTTCTTACCACTGAATTACCAACTGATGCATGGCAGAAATGGAATCATGCATGCATGGCAATGTTCTGAAGATGATCTTGTGTATTCTAGAACACCTCCTATACCACTTGGAATGACTATCCTCCAGAACAGTCTTAATATGACGTAcgttgtactgtgctgtactattATCTCACTGATTTGTACAGTAGTCTAATATCTTGTAATAAAGATTCCGAATAAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687892 lncRNA downstream 1536 38091387 ~ 38091667 (-) True G603932
TU687891 lncRNA downstream 2034 38090840 ~ 38091169 (-) True G603931
TU687814 lncRNA downstream 22856 38064579 ~ 38070347 (-) True LOC110527705
TU687813 lncRNA downstream 27506 38064579 ~ 38065697 (-) False LOC110527705
TU687792 lncRNA downstream 90946 37992359 ~ 38002257 (-) True G603836
TU687898 lncRNA upstream 3870 38100392 ~ 38100646 (-) True G603938
TU687917 lncRNA upstream 33554 38130076 ~ 38130550 (-) True G603956
TU687921 lncRNA upstream 36039 38132561 ~ 38132803 (-) True G603960
TU687923 lncRNA upstream 37544 38134066 ~ 38134298 (-) True G603962
TU687878 lncRNA upstream 170327 38266849 ~ 38267864 (-) True LOC110527712
XM_021609159.2 mRNA downstream 13569 38063289 ~ 38079634 (-) False LOC110527705
XM_036983195.1 mRNA downstream 16057 38063289 ~ 38077146 (-) False LOC110527705
XR_005052706.1 mRNA downstream 156827 37935371 ~ 37936376 (-) True LOC118965380
XM_021609156.2 mRNA downstream 160744 37803814 ~ 37932459 (-) True LOC110527702
XM_036983188.1 mRNA downstream 303354 37756561 ~ 37789849 (-) False LOC110527701
XM_036983198.1 mRNA upstream 73661 38170183 ~ 38198779 (-) False LOC110527710
XM_036983200.1 mRNA upstream 73661 38170183 ~ 38198806 (-) False LOC110527710
XM_036983197.1 mRNA upstream 73661 38170183 ~ 38198807 (-) False LOC110527710
XM_021609165.2 mRNA upstream 73661 38170183 ~ 38199190 (-) False LOC110527710
XM_036983199.1 mRNA upstream 73661 38170183 ~ 38199314 (-) False LOC110527710
TU684989 other downstream 2331933 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 3037975 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 3038070 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 3126417 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 3478328 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 492633 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 492895 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 494346 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 505808 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 966483 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile