RNA id: XM_036984429.1


Basic Information

Item Value
RNA id XM_036984429.1
length 1483
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110527708
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38128380 ~ 38160898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTGGAGTTGTTGTTCCCGTTGAGCGACTTTCTGCTGTTGCACCTGGCCGACTACACTATGGACAGTTTGACCATCCGCAGAGTAGGGGTGATCTCTGAGAGAGGGTTACCCCCACCCCGACACCCGCCCTGCCATCACCCTACCAGACAAGCCAGATCAGACCAGATAACCATGGCAGAATCATGTCATGTATCACTGATCCTACTGGTCATCCTCACAATCAGAGGAGTACTGGGCCAGAGGATCATTGGGGGTCTGGAGGTAACACCCTACTCTATAACCTACCAAGCCTCCATCCAGTACAACAAATTACACTACTGTGGAGGGACCCTCATACACCCTCAGTGGGTGGTGTCTGCTGCCCACTGCTGGAGACCGGCATACCTGATCAAAGTGGTACTGAGTGAGCACAGTCTATCCAGAGTGGAAGGCCTTGAGCAGGAGTTCAACGTCTCCAATGTGCTGGTCAACTACATGTATAACTACAGGACGTTCGACAACGACATCATGCTGCTCAAAcTGGAGAGGCCCGTGAATCTCAACGCCAACATCAAGCCCGCCATCCTGCCCAGAGTGGACATGCCCCCGTTACAACAGGGAATGACCTGTACGGTAAGCGGCTGGGGGGTCACCAATATCTTCAGCTACTACCTGTCCCCCGTGCTCCAAGCTGTGGATGTTGACGTCATCACCAACTGCCAGAACTACTACTACTTCAGGATCACAGACAACATGCTATGTGCCGGCTCTCCCTTCGGAGGGAAGGACTCCTGtcagGGTGACTCAGGCGGCCCTCTGATCTGTAATGGGCACTTTGAGGGCATCGTGTCCTGGGGCATCAGCTGTGCCAACCCCTACTTCCCTGGCGTTTACACCAAGGTCAGGAAGTACATCAGCTGGATCAAGTGGATCATGCAGAACGACAGCTAGCGACGCCGTCTCCTCCTTTGTAAGGATCACAATGGGATAACATGTACAGAAACTGTTAGTGTATCGATATGGGACATAGATACGGAACTACCCACTGTAAACCATTACCACCAGTTTTCTTAACTACATAGAAAACACGGGAAAAAAAATACACTCAGGTCTATCATCTCTCTTATGGCTACTGAATGCTGTACTGAATATGTCAAAAGTGAGTGATAGTCTTTTTGCTGATAGAAAGCATCTAGGTAATAGTGTTATCAGCAGACAGACGGGTTTACTGTATAGACGTGATCAACCTACAGCCCATGTAATCATTTTCTGAATAAGAAAAACCCACGTACAGCCATTGAAAAACATGGTTTCTTTTGTCCGGTCACCAAAACAGAAAGAGAGTTTAAGACACACTAAAACATTTGTGTCTGCACTGTTAGTTGACATATTTCCCTCTATATCATATTTTCATTAATATGTTATTTTGTATGTCTTGTCAAACACATACAGcgagggggaaaaagtatttgatcccctgctgattttgtacgtttgccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687538 lncRNA upstream 22216 38105954 ~ 38106164 (+) True G603607
TU687530 lncRNA upstream 29126 38098760 ~ 38099254 (+) True G603599
TU687412 lncRNA upstream 126075 37950666 ~ 38002305 (+) True LOC110527703
TU687391 lncRNA upstream 194002 37931994 ~ 37934378 (+) True G603463
TU687296 lncRNA upstream 370022 37758153 ~ 37758358 (+) True G603371
TU687603 lncRNA downstream 99487 38260385 ~ 38262976 (+) False LOC110527711
TU687600 lncRNA downstream 99534 38260432 ~ 38263498 (+) False LOC110527711
TU687601 lncRNA downstream 99534 38260432 ~ 38263404 (+) False LOC110527711
TU687602 lncRNA downstream 99534 38260432 ~ 38262976 (+) False LOC110527711
TU687604 lncRNA downstream 104652 38265550 ~ 38267253 (+) True LOC110527711
XM_021609158.2 mRNA upstream 87443 38035996 ~ 38040937 (+) True LOC110527704
XM_036983194.1 mRNA upstream 128742 37962888 ~ 37999638 (+) False LOC110527703
XM_036983192.1 mRNA upstream 128742 37970142 ~ 37999638 (+) False LOC110527703
XM_036983193.1 mRNA upstream 128742 37973609 ~ 37999638 (+) False LOC110527703
XM_021609154.2 mRNA upstream 552870 37469010 ~ 37575510 (+) True LOC110527699
XM_021609163.2 mRNA downstream 1717 38162615 ~ 38170254 (+) True LOC110527709
XR_005052577.1 mRNA downstream 99481 38260379 ~ 38267346 (+) False LOC110527711
XR_005052576.1 mRNA downstream 99482 38260380 ~ 38267346 (+) False LOC110527711
XM_021609166.2 mRNA downstream 99494 38260392 ~ 38263526 (+) False LOC110527711
XM_021609174.2 mRNA downstream 529442 38690340 ~ 38704044 (+) True lhfpl5a
TU686155 other upstream 1037624 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 1552308 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 3156975 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 3368722 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 4161625 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 338133 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 423576 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 1965636 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 2045671 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 2062277 40223175 ~ 40224171 (+) True G606464

Expression Profile