RNA id: XM_021609164.2


Basic Information

Item Value
RNA id XM_021609164.2
length 4290
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110527710
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38170183 ~ 38199500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACTCACACTCCCGTACAGTAGGTGGCGCTGTATACAACTGTGAAGAAGCAGCAGCATCTGTAAACGTTACCTAGTATCCAAAATCAAATTATATCAGTCGACATGATGACAAGTTGATTTTGTGACTGATTCAGGTTGCAGATTTAGAGACgttgggacagggaggagaggagatggggggatTGTGTAGGCCACTCCAGGCCTCTATGGTCTGGCTGGCCGTTCTCCTTCTGCTGCTGGGGGAGACGGTGAACACAGCCCAGGAGTTTGACCCCTACAGAGTCCTGGGGCTCACCAAGAGCGCCAGTCAAGCAGAGGTCAAGAAGGTGTACAAGAGGCTGGTCAGAGAATGGCACCCAGACAAGAACAATGATCCTGGGGCTGAAGATATGTTCATCAAGATCACTAAATCTTATGAGATCCTGGGGAATGTGGAGCGGCGTGCTAACTACGACCGCTATGGACAGATGGAGGAGAACAAGCAGGGTCAGCACCAGCAGGGCTTCAACCGACACTTCCACAACAGCTTCTATTTCGACGAGTCATTCTTCAATTTCCCTAGGTCAGGCCGGGACTTCTCAGACAGCAAGTATCTGCTCGACCACGCAGGGTTCAACAGTAAGGTGCTGCCCGACAGCTTCAAGCGGCCCTACCTGATCAAGATCACCTCCGAGTGGTGCTTTGCCTGCGTTCACATCGAGCCAGTCTGGAGGGAGGCAGTACAGGAGCTAGAGCCACTGGGTGTGGGTATCGGCATTGTTGACATTGGTTACGAACGTCGCCTAGCCAACCAGCTGGGTGTCCATCGCACGCCATCCATCCTGGGTGTGGTCAATGGTAGAGTGACCGTGTTCCACTACTCCGTGGTCAGAGAACACCTGCGACAGTTTGTAGAAGACCTGCTGCCTCAGAGGCTGGTGGAAAAGGTAACAGATAAGAACTATGTGTCCTTCCTGGGCAGCTGGCATGTTGAGAACAATCCCAGTGTGTTGCTGTTTGACCAAGTGCCTGCAGTGCCCCTGCTCTACAAGctcaCAGCGTTTGCCTTTAAGGACTATGTGCGGTTTGGTTACGTGGACCAGGGACTGACAGAGACATCCAGACTACTGCATCAGTTCAACATCAACAGCTATGCTCCCACAATGCTGCTGTTCAAGGAGAACACTGAGCAACCTGCTGATATTATACAGgctaaAGGGATGAAGAGACAGATCATGGAGGAGTTTGTGTCCAACAACAAGTACCTGTGTGTCCCTCGGTTGGTCAACCAGCATCTGTTCGATGAGCTCTGCCCCATCAAGCAGTTCCACCGGCGCAGGAAgtaCTGTGTGCTGCTGATCACTGGTGAGGAGCCAGGGTTTGTCCCTGGTAACCAGGCCTTCCTGACCTTTGCCTCGTCCAACACTAAAGACGTCCTGCGCTTCACATATGTCTACCAGAGACAGCAACAACCACTGTGTCAGGCCTTGCTCCACAACCAGGCCCCACTGTTCGCACAGGTGGTGATACTGGAGAGGCGGAGCCCGGGAGGTAAGGCTGTGTACCGGTCTGTGATTGGTGGATGGAACGGCAGTGACGATGATAAGACCCGCCTCCACGAGCAGCTGGAGCTCCTGCAGAGAGACCCCTCCTACCTGAGCTATGACGCCACACTACCTGAACTAAACAACGAATTGTCCCCCATGTTTCTGATTCAGTGGATCAATGCAGCTTACGATTATTTCCTTCAAATCTATGATGACCTTCTCTTCTCCAACTgGCGGGAGATGATGCCCATCCTGTCTCTCATCTTTTCTGCTCTGTTCATCCTCTTTGGTACTGTCATCATCCAGGCCTTCAGTGACTCGGGTGAAGAGAAGCCTCCCCAAAAACCAAAGCCAAAGAACCCACCAAAGACTGAAGACTCACCTGGTAGAGCCAATACTTCCAGTCGTCCTCCTAAGAAGGACTTTGTGGAGGTGACGGAGCTGACAAACATCACCTACATCAGTAACTTGGTCAAGCTGAGACCTGGTCACATCAACGTGGTCCTAGTCCTCACTGACGCTTCCAAGAATGCTCTGCTCAGGAAGTACGCCAAAGAGGTTTTCTCCTTCTCCGGGACCCAGACCCTACACTTCTCCTTCCTGAATGCAGACAAACACAGCCAGTGGATGCCATCTCTCTTGGAGTCTTGTCCTACTGCAGCCCGGGTCCTGACCcacggagaggaggaggaagggggaggaggtgagggggatGAATATTCCTCTCCCTTCTCAGGTCGTCCCAGAGACTTCACAGGCCATGTTCTGGCACTCAATGGACACAAGAAGTACTTCTGTCTCTTCAGACCTGTCTTCACTGGGGACACGGACACTGGCGGAGAGAGCTCAagctcatcatcttcatcatttgACGAAGGCTCCAGGAGAAAGTCTCGGTCAAGGTCGCGATCCCAGTCGAGCTCACGTTCAAGGTCCAGGGAGGAGGGGGGTTTGTCgggtaggggtgggaggggtGGTGGGCGGGCCTCCAGGGCTACCAGTCTGGAGGTGCACCATAAGCTGGACAGGCTGGGGCTGTGGATGGAGAGGCTGATGGAGGGGACTCTGCCCAGGCACAGCGTCCCTGGCTGGCCTGGGTTGGACACCACCTCCCCAAGCTCCAGCCCCGCTCCCCAGAACTGAGGAACCACACTGGACCGGACCCGACCGGACCCATATGAAGTGTAAATGAGATTTCTGCAGCTTAAACGTAGCCAGTAGTCATTATGCAAAGCCAATGAATAATACAGAAGATTAATATAACCCTATAAAGTATACTAAccttgtcccagatctgtttgtgctttctTGCGAATGCCAACTTCAGGTGTGACAATGGTCATAGGAGTTGGCCAGATGGCACAAACTGATCCGGGACCAGGCAAGAAACTGAAGCTCCATTTACCCTATCACAACAATCATTTTTTACTTTAGCTTTAGGGACTGTAGTAGGTGACGCTTCAAATGCACTGATCTTGCCATTGTCTTTCATAGGAGGCTGTTAACCCGGAATTAGGGCTTGAGACAATTGACGTGTTGCACTGTAAAGCACTGACTACTGTATGTTTGGATATTTGGTTGTAAATAAACACCAAGGACCCTATTCAATAACCACCAGCTCTTAGGATTtaaagaaagggggggggggggggagtatattATGTGCaattcagaggaggctggtggggtgagctataggaggacaggctaggTTAGGATCCATGTACTGAACAAAATGATGTGaagcaaaaaaaaaatctcatgTACAGTTTTAAACTAGGGTCCTGTTCAAAGGAATACATGTTTGAAACAGGAAAAGCACACTCGTTTTTGTAGCACAAATTCAGGTATGACCTCCCTTTTCACGACATTTCCTCCTATTTCATACTTACTGAACTTTTACCACAGTAACGCTGGACTAAGGTCAGTTGGCTTATTCTTTCCTAATGGTTAGGACTTGGGGGTGCTAAACTGTTCCTAGCTGGTTGAATAGAGCCCTTGGTGTTCTCTGCTGCTGCTCAGGGCCAGGTCCCCAAGCTGGAGATCTCAGTACAactattttataaatatttatttcCCTTTGCAGATCAGGCAGAAAGGTTGAATCATCCTTCTGTCTCGTTTCTTTTACTTTTGTTTTGAGTCCGTGCCCTTAAATATACCGCTATAGATTTTATTGCATGTCTTTGTCAGAAGAATATTCTGTTTTGTCACCGTGAGATTTGCAAAGCTCCATCAACTTTATTCCACAACTCTTTCCTTCCTGTACCTCATGATGTGCTTGTGAACCATGCTTGTGTgatgatgagtaaccttgcctgagacctgaagactttgGTTAAGACTTTAGCTTAGCGAGCTAAACAGTCTGTGCTTGAAACCGTATGGTCCATGGTTCAAACCCAGTTGGTCACACTTGCACACAAGGTTTGCATAAGATGTCCTTTACTTACATTCTTGCTACAGAATGATTTCCCGCTCGCtaagttatagctagatataaacTACGTAGATATTTCACTTTGCCTGCCTTTTCATTTGAATGTGTTTCTCATGTCCATGTCCAATATTGGTGCTGATGAGAGATTTAATCCAACGTAAATTTGAGGAGTTGAACTGTTTGGGAGAGTCTGTAGTACTGTAGTCCATTTTAAACGATTAGTATGAAATGATGTGAAATATAGAATTATTTGATGTGCTGTTGCTATTTATTTGATGTAACTATGCTTCCTAACATGAATAAACATTTTCTAAATCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687923 lncRNA downstream 35885 38134066 ~ 38134298 (-) True G603962
TU687921 lncRNA downstream 37380 38132561 ~ 38132803 (-) True G603960
TU687917 lncRNA downstream 39633 38130076 ~ 38130550 (-) True G603956
TU687898 lncRNA downstream 69537 38100392 ~ 38100646 (-) True G603938
TU687852 lncRNA downstream 73779 38094441 ~ 38096404 (-) True LOC110527706
TU687878 lncRNA upstream 67415 38266849 ~ 38267864 (-) True LOC110527712
TU688010 lncRNA upstream 71255 38270689 ~ 38270930 (-) True G604049
TU688019 lncRNA upstream 81056 38280490 ~ 38280791 (-) True G604058
TU688472 lncRNA upstream 384859 38584293 ~ 38593820 (-) False G604484
TU688477 lncRNA upstream 384859 38584293 ~ 38588955 (-) False G604484
XR_005052575.1 mRNA downstream 73661 38093203 ~ 38096522 (-) False LOC110527706
XM_021609159.2 mRNA downstream 90549 38063289 ~ 38079634 (-) False LOC110527705
XM_036983195.1 mRNA downstream 93037 38063289 ~ 38077146 (-) False LOC110527705
XR_005052706.1 mRNA downstream 233807 37935371 ~ 37936376 (-) True LOC118965380
XM_021609156.2 mRNA downstream 237724 37803814 ~ 37932459 (-) True LOC110527702
XM_036983204.1 mRNA upstream 14597 38214031 ~ 38260106 (-) False LOC110528948
XM_036983203.1 mRNA upstream 14597 38214031 ~ 38260309 (-) False LOC110528948
XM_036983205.1 mRNA upstream 14597 38214031 ~ 38260322 (-) True LOC110528948
XM_021609168.2 mRNA upstream 64937 38264371 ~ 38269525 (-) False LOC110527712
XM_021609167.2 mRNA upstream 64937 38264371 ~ 38269527 (-) False LOC110527712
TU684989 other downstream 2408913 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 3114955 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 3115050 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 3203397 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 3555308 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 389721 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 389983 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 391434 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 402896 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 863571 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile