RNA id: XM_036983204.1


Basic Information

Item Value
RNA id XM_036983204.1
length 2218
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110528948
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38214031 ~ 38260322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTGTAAGAACACTAGGATCTCAGTTCTCAGTTGACTAACTATTGTTGcacccataaaaatctgtcagtttaagctagagatatctgttttgttgcatgggctgcgtctcaatccacttaATCAGCCTATGTCGGCCTTCCACATATGTGGTGGACGTTTTGGCCTActaactaatatgacccctctatagaaagatgagactctcacaaagCCCAGTAGGACTGGTATGAAGGTAACCTGGTACCggtttaaaaaatgaatggaagtcctcatctttcttatatctcctagatataggacagacacttccaaaccttattccttatgaaacattttttttctctgtTTTTCCATAtcttagcttagtagaacccataAAGATGGATGGATGATTTTTCAGCAATAATGCATCCAGGTGAAACAGGGGATGAACTTCAGAAGCTCGTCGTATGACGTGAAGTCGGGGCTGAAGATAGCGGTGAAGAAGCTGTCGAGGCCGTTCCAGTCCGTCATCCACGCTAAGAGGACCTACAGAGAACTACGACTCCTCAAACACATGAAACACGAGAACGTGATCGGCCTGTTGGATGTGTTTACGCCCGCTACCAGCCTAGAGGAGTTCAACGATGTGTACCTGGTGACCCACCTGATGGGGGCGGACCTCAACAATATTGTCAAGTGTCAGAAACTGACGGACGACCACGTTCAGTTCCTCATATACCAGATCCTCCGGGGTCTcaagTATATCCATTCAGCAGACATCATCCACAGAGATCTGAAGCCCAGTAACTTGGCAGTGAATGAGGACTGTGAGCTCAAGATCCTGGACTTTGGTTTGGCGAGACACACGGATGATGAGATGACGGGTTACGTAGCAACCAGGTGGTACCGCGCCCCAGAGATCATGCTTAACTGGATGCACTACAACATGAcagttgacATCTGGTCGGTGGGCTGCATAATGGCGGAGCTGCTAACCGGAAGGACGTTATTCCCCGGCACCGACCATATTAACCAGCTGCAGCAGATCATGAGGCTGACAGGTACACCCCCGGCCTCTGTCATTAGCCGGATGCCCAGCCACGAGGCCAGAAACTACATTAACTCCCTTCCCCAGATGCCCAAGAGGAACTTTGCTGATGTGTTCATTGGCGCTAACCCACTAGcGGTGGATCTGTTAGAGAAGATGTTGGTTCTGGACACTGATCAGCGGATCACAGCGTCAGAGGCCCTGGCCCACCCCTACTTCTCCCAGTACCACGACCCAGACGATGAACCAGAGTCTGAGCCATACGACCAGAGCTTTGAGAGCCGTGAGCTGGAGATAGAGGAGTGGAAAAggtTGACCTATGAGGAGGTTTGCAGCTTCGAGCCCCTGCCATTCGACGGAGACGAGATGGAGTCCTGAGGGAACTAGGGTGATGTCATTGATAATCTTCTGCCTTCTCCTTCTCTTATGGAATTGTGTTGAGGAGGAAGTGGCATGTAGACATTGAACTCAGACCAGTTATGCGTTTCCTCCCCTAATGGTTTAGGTTAGGATCTGGGAGTAGGTTGAGCCTATCTTAGATCAGAATTTAGAGGCAACTTCCTCCCAGAGCACACAACCTTGTGTGAGGACTATCAACTCTCCGGACTatttaacaaacaaacaaatgggAAACCACGACATTCAAGTGTCTGTCGTCGTTCATTTCTGGGGTCATTCTCGGGTTAGAGATCAAGGGTTAAAGGTGACCGACCCCACCCTCCCGCTTGCTGTTTTATATTATATTGTTTATGTTTTGGTTTGTGGGCCGAACTGGGGAAATTACTTTGTAATATtgtatctactgtttgtgtgtttagAATATCTGTTAAGTTAGCTTCAGATTTTCACATGATTTGCTAAAAAGTATCTTATTTAATAAATTCCTGGAAATGGTACTCAGTTCAATATGGCAAAAACAATCAACCACATTATTTAATTTAACAAACCACTGGTACCTTCAAACATTTATTTATGACTTTAGGTTGGTAGTGTATAGCCAGATGTTATTTTACGTCCTTTTGGATCGAATTCAGTAGGAAACCCAACAGTGTAAATCACCTCTGCCCTTCTCTGAAAAGTTCTGTCTCCACAGTCAAACTGTACTCTGTTGTTATGCCTGCCAGTGttttacatatgtaaataaggctGCACTCTTGTAAATAAATGATACTATGCACACAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687923 lncRNA downstream 79733 38134066 ~ 38134298 (-) True G603962
TU687921 lncRNA downstream 81228 38132561 ~ 38132803 (-) True G603960
TU687917 lncRNA downstream 83481 38130076 ~ 38130550 (-) True G603956
TU687898 lncRNA downstream 113385 38100392 ~ 38100646 (-) True G603938
TU687852 lncRNA downstream 117627 38094441 ~ 38096404 (-) True LOC110527706
TU687878 lncRNA upstream 6743 38266849 ~ 38267864 (-) True LOC110527712
TU688010 lncRNA upstream 10583 38270689 ~ 38270930 (-) True G604049
TU688019 lncRNA upstream 20384 38280490 ~ 38280791 (-) True G604058
TU688472 lncRNA upstream 324187 38584293 ~ 38593820 (-) False G604484
TU688477 lncRNA upstream 324187 38584293 ~ 38588955 (-) False G604484
XM_036983201.1 mRNA downstream 14531 38170183 ~ 38199500 (-) True LOC110527710
XM_021609164.2 mRNA downstream 14597 38170183 ~ 38199434 (-) False LOC110527710
XM_036983199.1 mRNA downstream 14717 38170183 ~ 38199314 (-) False LOC110527710
XM_021609165.2 mRNA downstream 14841 38170183 ~ 38199190 (-) False LOC110527710
XM_036983197.1 mRNA downstream 15224 38170183 ~ 38198807 (-) False LOC110527710
XM_021609168.2 mRNA upstream 4265 38264371 ~ 38269525 (-) False LOC110527712
XM_021609167.2 mRNA upstream 4265 38264371 ~ 38269527 (-) False LOC110527712
XM_036983206.1 mRNA upstream 43924 38304030 ~ 38499659 (-) False LOC110527714
XM_036983207.1 mRNA upstream 43924 38304030 ~ 38499669 (-) True LOC110527714
XM_036983210.1 mRNA upstream 271826 38531932 ~ 38659391 (-) False LOC110527715
TU684989 other downstream 2452761 35760699 ~ 35761270 (-) True G601245
TU684544 other downstream 3158803 35001880 ~ 35055228 (-) False G600881
TU684542 other downstream 3158898 35002480 ~ 35055133 (-) False G600881
TU684513 other downstream 3247245 34965447 ~ 34966786 (-) True G600872
TU684338 other downstream 3599156 34614492 ~ 34614875 (-) True G600721
TU688481 other upstream 329049 38589155 ~ 38597519 (-) False G604485
TU688470 other upstream 329311 38589417 ~ 38594816 (-) False G604484
TU688480 other upstream 330762 38590868 ~ 38597519 (-) True G604485
TU688474 other upstream 342224 38602330 ~ 38639400 (-) True G604484
TU689636 other upstream 802899 39063005 ~ 39068828 (-) True LOC110527723

Expression Profile