RNA id: XR_005052577.1


Basic Information

Item Value
RNA id XR_005052577.1
length 5220
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110527711
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38260379 ~ 38267346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCCGGATATGTCATTTGTTTTCCATCCATTAGTTGTCGCTCGATTGGTCATGCTGGCTGCTGACTAACACAGGGAAGGAGGACAACATTTGACAACAACATGGACCTTTGAAAATAACTGAGACTTCAACACAGTCTTGGACAACAGCAAACTGCAAACATGACAAATGtgtACTCGTTGGATGGGATTGTGGTATTTGGAATTCTGTTCATCTGTACATGTGCATACCTCAAGAAGGTGCCTCGCCTCAACAGCTGGCTACTCTCAGAAAAGAAAGGTGTGTGGGGGGTGTTCTATAAAGCTGCAGTGATTGGGACTAGACTCCACCATGCTGTGGCGATAACCTGTCTGACGATGGCATTGTACCTGGTCTCCTTAAAGTGACAGTGTCAGGCTGGGATGGACCAGACTGGACTAGGATGGACTGGAGTGGACCGGACATGGCCAGGCTTGGCTGGGCTGGATTGGCCTGTGCTGGTTTGCCACCCATGGACACTGTTTGGACAATGTGTGCCCAACACTCCCAATTTATTCACCCAGGACCTGTAAAGGATAAGGATAAGCCAATAGTGCCCCACATTAGGTAAATAAGATCCCTGTAGCTCACTGCACTCTTCTAAACCTGACATCATCCATCCCTGCATGACACAACTGTCATCCAGTTTACCCTGAGTTTCCTGTACAGATCTTATAGAACAGTGTTTCTATTCTTGAGGTGCACATTCTTTGTTCTGGCTCAACACTAACACATCTGATTCTACTGTTTAATTGCTCAACCAGTCACCAAGCCATTGAATAGTTGAATCGGGTGTGTTAGCTCTGGGCTGAAACAAAACCGTGGTCCACCTGGAATGGATTAGGGATCACAGTGATAGAGATGTCAGCAGGCTAAGTAGTGTCAGCATGCTGATGTACTCAGCACGCTCATGTGTTGAGTAGTATCTTTATTTAATACTGTTGTTAGCAGAAATTGTTGTTTAATAATTTTTATTATCATCTAATTACCATTCTCAACGGTTTATTCTGGGGAAAGGACTGGTATTAAGGAATAGCCTAAAATAATGTGGAAAATATTAATTCCTGTTTAAAGTCAGACTTCGGTTGTATATATTTAGGGGGGAAAGTCAGTATAATAGATTTTAAAAAGCTGTTTTCTGTAGAGCACCATAGAGAAGAGCATCACATGCATTGTTGTTAAGTCTAAATATCTCTTTGTTTATTCAAAGGTATTTTTTAACGTTAAAGTGGTTGTACGTTGTCATGATTATCGTCACTATCATTTTTCAACAACCTGGAATAACCCTGGGCCATAGTTAAAAGCTATAAGGTCACATGTTCAGGTAAACTCTTGGTTCCTTGCCAAATTTTCACAAACAACTAATATAGGAGAAATGTCTTGGTGTCCAGCTTAACCTCTTATTTTCTTTCAACCTCTGTTCTTCTTTTTTTTGCTCTGTAATTTATGTATGATTTCCCTGTTTGGAAAAACCACTACAGATTTCTGCACCAGTGCTTTGTGACTGGCCCGCTGTATGTTGTGTGACAATAGCGCTCATCATCTTTGGggaaaataaattttaaaaaattacttaAAACACCTTAACAGTGCTGTATGTTACATTTTAGTGAAAGATGCAATGAGAACCTCTGTCAATGAAAGTGTGCAACTCATGACCACAGCTCAATAACATGTACATTGTGGCGTTGTCTTAATCTACAGTAAGTTATAtatttaaaacctttatttaactaagcaagtcagttaagaacaaattcttatttacaatgacggtctacaccggccaaacccggacgacgctgggccaattttgcgccgccctatgggactcccaatcacggctgtttgtgatacagcctggattcaaactagggtgacgcctctagtactcagatgcagtgccttagaccgctgcctcACTCGGGAGCCCATTGTTGGAGAGATAGCAACCCTTAAAGCACTCTTGTATGATAATGGTGGGTTAAATTGTGGATGAGGGTAGAATAGACTGACAATATCCCTTTTCATTGCTTTCACCATTATGTTTTGTATACTTTAGAAATTATTATGTTAACTGGTGTTGATGACTGGGATTTCAAAAAAAGGTCCAATGAAAGATCTCCTTTGTTTCTTTCTGATTGTTTTACAGAATTATGTTCACACTCCTCAAACGAAACAAACCTAGGGCttgattcaatccgtatcgccgAAATTGCGCGTTATTGTGGGTTtgcaatttaaaggtaatttccgattgagctgacatatgcagTCTCCGCAAACGCGGGAATATTACCTTATATAGGCCAGGGTTTCTCCAAGAATCTCAATATCCATATTTGGTTAACTCTCTTGAAATAGATGTTAACTGCTGTCTGCGTTCTCAGGTGGATAATTCCCcatctgctccccccccccccccccctgctctctcttgAGCTGAGCAGCTGTGACACCAGTTTCTCCTgctggagggagagtgggagggagcgACAATTAGACAGGGAATCAGATTTGACCTGCATAGAGCTGTAAGATGTACCTGTTCAACATAACACCACATTCACTTACACCGCTGCTGATTCAACTCTGAGTGATGGCATAGCTTGACCTGGAAACAAGACCAAGATTTTACTTTggcgtgcatgtctgtgtgtgtgcgagagctTCTCCCTCAATCAAGATTCATCCCGAGAGAGCACAAGCTTCCCTCTTTCTTCAGAGCAGCAGTTCAGCTGTTATGTGACTATCCCTGCACACAGGTGTTTACAGGAAATGGATATCAGAAGCCACAGGAGAGggagctacgtCTGTCGAAAGGCCCATTTGTTCGTCTCTGTCTGTCAAGGGCCACGATGACATTATCCATGACCTCATCCATCCTGGAATCCGACCAATCCCGTCCTGGAATCTCCTCTACACCGTGACCACCAGTGCGAGTTGATGCTCAGTCACAGATGGTGGAAACAGTTAACAGTCAACACGACCAGGTTGTAATGGGAGACCAGATTTAACTGTCATATTAGGCCCGCTGAGACAATGTTGTTATATAGCTTACAGTAGTGGAATAATACTATTTATTCCTAAATTACAGTTATACAGTACCAATAAGTATAGGTGTATACATATTGATATGAGTACCATCTCAGTTCTGGAAAACTGTGCCAAAACAGCTCTAAGTCTGCTGGCTTTTGTCTTAGTAACAAAGGTAGATGGCATTTTATTCCAACAAATAACTGCTTAATAAAGATTTTATTACAAAAATACACTTTTCAAAAGCATTTCAATGAAATGCTCAATAGGtcaaaatgttttaaacaaacaATGAGGAGAGGACAGTCATAGAATGTCTTTCAACATCTTTAATGGAAGCAGTTATTTTTTTCGTTTGTTGAAAAGTAATGCCAGCTGGAAAATTGCCAATACAGAAGCTCAGctgaaaacacacacagctctgttgGGCATCACTGGGCTTTGCAAATACGTCTACCAAACACAGACAGCGGGTGGGTTAAATCTCCcagcagaacagaacaggctCTCAATaatcaggggagaagagagaggccaACATTATACATTTTTAACCTCAATACAACTCCAAACACCATCAAGCTCTGAATGTATAATTCTGGGCCATTGTTCCTCATCAATAGGTAATAAGCACCATATTCATATCAATATAAtcactttcatcacattcaccaATAGGTCCACTTTCACTCAAAGACAGACCCAGGAATTTGTAAATATAGACAAGAATGAGGTGGATGAAATTATACCTTGAAGACAGAATGAAGTGTGTCAGttagcaatgagctgtcgcccactatgatgtgggcgtgccccaaggttCAATACTGGGGCTCCTTCTaattcagcctgtacattaattatctgccttctgtctgtacttgatctgaagttcaaatgtatgcagatgatatagTGATATGTGCCTGCAAAGAGCAaccaagctgcacaagaactcactattgtaatggtccaggttacaaagtggctcagtgactcatgtttgcatctcaatgtgaagaaaaaaaacagtctgcatgttcttcacaaagagggcaactgaTGCTACTgaaccagatgtctatgtgtcaggggagaagctccaagTGGTGTCTGATTTTAAGTAcattggcatcatacttgattccaaacTCTTTTAAAAAGCAAGTGAAAAAGGTAACTCAACCTAGCTATTTTCCGATTCATATAAAATTGTGACTActgaggtagcaaaactgtactatgatactcccccacttaacatactgcttgactagttgggcccaagcttgctgtacaacattaaaacccattGTCTATCTACAAACAGCCTCTCAAAGTGCTTCATAGGAAGcacaatagccatcatcactgtcacatcctcagaaagcatgagctcctgagttggaaaAATCTTGtgcaagatcctaaatggcctggctccccctccactcaggaCTTCTGTTAATTCAAAAAACCCAAAcccatggcagcagatccacaaggtctgccatgagaggtgactacAGTTGAAGGAAAAACACCTTTCGTCAATCTGCTTtttctgtgagagcttcccatgtctggaatacacctTGAGCAatgtcttcatgttttttgtGAAGTTGCGATAGGTGCAGTTGTGTGTGtcatcagacacacacaactgCACCTATCGCAACTTCacaaaaaacatgaagacatTGCTCAAGGCCAATCACACTTGTGAACATAATCACTAGCTGTGTATGGCTGCTTTCCATGTTATTTGTAGCTTTTGAGGTGTGAAAACACTTTGTTGCTATTATGTATTTTGTTGCTTTTTGTGCTATTGCTCTctctgcatgctacgtgttgcttgtcctatgttgctctgcgtgtgtttactgctcaatgattgtctgtattgttattgttttgaataacctgcccagggactgcggtggAAAATGAGCTAAAAATGGCTAAAATCGGCACTTTCACTGAAACGTTGATTATGGATATGTAAAAATAAACAAACTTGGGTCTCTTTATTGTCCTACCAGTAAGGTGAATACCAGTTCCTTTAAGTACACTCACTCCCAACATGCTGttaataataaatacattgaCTCCTGTCCTATTCTGTGGTACCAGTTTGCTTCATTTTAGTCCGTGAGGGCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU687573 lncRNA upstream 120371 38139781 ~ 38140008 (+) True G603635
TU687572 lncRNA upstream 121986 38138079 ~ 38138393 (+) True G603634
TU687563 lncRNA upstream 126975 38133182 ~ 38133404 (+) True G603630
TU687559 lncRNA upstream 131316 38128783 ~ 38129063 (+) True G603626
TU687538 lncRNA upstream 154215 38105954 ~ 38106164 (+) True G603607
TU687656 lncRNA downstream 1713 38269059 ~ 38269382 (+) True G603709
TU688016 lncRNA downstream 8677 38276023 ~ 38276222 (+) True G604055
TU688018 lncRNA downstream 13194 38280540 ~ 38281016 (+) True G604057
TU688153 lncRNA downstream 256213 38523559 ~ 38530447 (+) True G604191
TU688230 lncRNA downstream 317128 38584474 ~ 38594822 (+) False G604258
XM_021609163.2 mRNA upstream 90125 38162615 ~ 38170254 (+) True LOC110527709
XM_036984429.1 mRNA upstream 99481 38128380 ~ 38160898 (+) True LOC110527708
XM_021609158.2 mRNA upstream 219442 38035996 ~ 38040937 (+) True LOC110527704
XM_036983194.1 mRNA upstream 260741 37962888 ~ 37999638 (+) False LOC110527703
XM_021609174.2 mRNA downstream 422994 38690340 ~ 38704044 (+) True lhfpl5a
XM_021609189.2 mRNA downstream 923735 39191081 ~ 39201578 (+) True LOC110527727
XM_021609192.2 mRNA downstream 961355 39228701 ~ 39238479 (+) False LOC110527729
XM_021609193.2 mRNA downstream 961359 39228705 ~ 39240208 (+) True LOC110527729
XM_021609195.2 mRNA downstream 1024310 39291656 ~ 39308642 (+) False LOC110527730
TU686155 other upstream 1169623 37089624 ~ 37090756 (+) True G602295
TU685500 other upstream 1684307 36573887 ~ 36576072 (+) True LOC110527686
TU684077 other upstream 3288974 34971128 ~ 34971405 (+) True G600531
TU683953 other upstream 3500721 34759347 ~ 34759658 (+) True G600431
TU683457 other upstream 4293624 33966289 ~ 33966755 (+) True G600013
TU688169 other downstream 231685 38499031 ~ 38499662 (+) True G604207
TU688229 other downstream 317128 38584474 ~ 38591294 (+) False G604258
TU690507 other downstream 1859188 40126534 ~ 40134450 (+) False G606400
TU690574 other downstream 1939223 40206569 ~ 40206897 (+) True G606452
TU690586 other downstream 1955829 40223175 ~ 40224171 (+) True G606464

Expression Profile